Browse Element(s) Details


OsAffx.30196.1.S1_at

Description tigr:9637.m03335
TID=OsAffx.30196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=135585 cysteine proteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3907011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39020Os.31867.1.S1_at11/119+22399706..22403882expressed protein
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein
LOC_Os09g39050OsAffx.6527.1.S1_at11/119+22418365..22419612F-box domain containing protein, expressed
LOC_Os09g39060Os.26871.1.S1_at11/119+22420417..22422064Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39100OsAffx.30197.1.S1_at10/119+22445185..22447871Papain family cysteine protease containing protein, expressed
LOC_Os09g39110OsAffx.30198.1.S1_at10/119+22450128..22452723Papain family cysteine protease containing protein, expressed
LOC_Os09g39120OsAffx.30199.1.S1_at11/119+22455000..22457097Papain family cysteine protease containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30196.1.S1_at--773--9951Chr09:22428120..22428144 (25 bp)
TACGCGATCGCGACGAAGAAGCTGC
LOC_Os09g39070
OsAffx.30196.1.S1_at--1080--8351Chr09:22428042..22428066 (25 bp)
GGCGGGTACACATCGACGGTCCTGT
LOC_Os09g39070
OsAffx.30196.1.S1_at--341--4011Chr09:22427876..22427900 (25 bp)
CGTCGTCCAACGAGGTGGCACTGAA
LOC_Os09g39070
OsAffx.30196.1.S1_at--525--5391Chr09:22427854..22427878 (25 bp)
GAAGCAGAGCGTGTACAAGCAGCCC
LOC_Os09g39070
OsAffx.30196.1.S1_at--867--7151Chr09:22427829..22427853 (25 bp)
GTCTCTGTGCTCATTGAGGCCAACA
LOC_Os09g39070
OsAffx.30196.1.S1_at--707--8451Chr09:22427313..22427337 (25 bp)
TGGCCCGTGCGGGACATCGATAAAC
LOC_Os09g39070
OsAffx.30196.1.S1_at--1125--7651Chr09:22427271..22427295 (25 bp)
GGGATATGGCGCGACACCGGACAAC
LOC_Os09g39070
OsAffx.30196.1.S1_at--551--5671Chr09:22427174..22427198 (25 bp)
GACATTGCAGCGAAGTCTGGGCTAT
LOC_Os09g39070
OsAffx.30196.1.S1_at--220--8311Chr09:22427155..22427179 (25 bp)
GGCTATGTGGCATCGCCCTGTACGG
LOC_Os09g39070
OsAffx.30196.1.S1_at--494--6991Chr09:22427136..22427160 (25 bp)
GTACGGCATGTACCCCATCAAGAAA
LOC_Os09g39070
OsAffx.30196.1.S1_at--56--9971Chr09:22427126..22427150 (25 bp)
TACCCCATCAAGAAAACCGCTGCAA
LOC_Os09g39070
Target Sequence 
TACGCGATCGCGACGAAGAAGCTGCTCCGGCTGTCGGAGCAGCAGGTGCTGGACTGCTCCGGCGGCGGCGACTGCGGCGG
CGGGTACACATCGACGGTCCTGTCGGAGTTCGCCGTGAAGAAGGGGATCGCGCTGGACGCGAGCGGCAACCCTCCCTACT
ACCCGCCCTACCAAGCCAAGAAGCTGGCCTGCCGGACGGTGGCCGGAAAGCCCGTGGTGAAGATGGACGGCGCGGCGTCG
GTTCCGTCGTCCAACGAGGTGGCACTGAAGCAGAGCGTGTACAAGCAGCCCGTCTCTGTGCTCATTGAGGCCAACAGCAA
CTTCCAGCTGTACAAACAGGGTGTGTATAGTGGCCCGTGCGGGACATCGATAAACCATGCCGTGTTGGCGGTGGGATATG
GCGCGACACCGGACAACACCAAGTACTGGATCGTTAAGAACTCGTGGGGAACAGGGTGGGGTGAGATGGGTTACATCCGG
ATGAAGCGTGACATTGCAGCGAAGTCTGGGCTATGTGGCATCGCCCTGTACGGCATGTACCCCATCAAGAAAACCGCTGC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis