Browse Element(s) Details


OsAffx.30197.1.S1_at

Description tigr:9637.m03338
TID=OsAffx.30197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=135589 cysteine proteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3910010/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39060Os.26871.1.S1_at11/119+22420417..22422064Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39100OsAffx.30197.1.S1_at10/119+22445185..22447871Papain family cysteine protease containing protein, expressed
LOC_Os09g39110OsAffx.30198.1.S1_at10/119+22450128..22452723Papain family cysteine protease containing protein, expressed
LOC_Os09g39120OsAffx.30199.1.S1_at11/119+22455000..22457097Papain family cysteine protease containing protein
LOC_Os09g39130Os.21363.1.S1_at11/119+22458747..22461365expressed protein
LOC_Os09g39140OsAffx.18056.1.S1_at11/119+22465311..22466222Papain family cysteine protease containing protein
LOC_Os09g39150Os.47463.1.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39150Os.14491.2.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30197.1.S1_at--803--4671Chr09:22447015..22447039 (25 bp)
GCGGGTACCCATACGATGCATTCGA
LOC_Os09g39100
OsAffx.30197.1.S1_at--856--5651Chr09:22446978..22447002 (25 bp)
GACAGGCATATCTTTGGACAATCGG
LOC_Os09g39100
OsAffx.30197.1.S1_at--124--6871Chr09:22446942..22446966 (25 bp)
GTATTATCCTCCTTACGAGAACCAG
LOC_Os09g39100
OsAffx.30197.1.S1_at--39--651NONE
ATGCAGATTCGACCCTAGGAAGCCT
NONE
OsAffx.30197.1.S1_at--689--7251Chr09:22445929..22445953 (25 bp)
GTCCGGCAACGAGACAGCTCTGAAG
LOC_Os09g39100
OsAffx.30197.1.S1_at--644--991Chr09:22445899..22445923 (25 bp)
AGTGTTAAGTCAGCCCGTGTCCGTC
LOC_Os09g39100
OsAffx.30197.1.S1_at--518--9291Chr09:22445880..22445904 (25 bp)
TCCGTCGTCATCACAATCAGCGATG
LOC_Os09g39100
OsAffx.30197.1.S1_at--792--3071Chr09:22445866..22445890 (25 bp)
AATCAGCGATGAGTTCCGCTCCTAC
LOC_Os09g39100
OsAffx.30197.1.S1_at--762--4991Chr09:22445285..22445309 (25 bp)
GCATGGAGCGGGATATCCTCAACAA
LOC_Os09g39100
OsAffx.30197.1.S1_at--844--7531Chr09:22445249..22445273 (25 bp)
GTGGCATTACCACCTGGGCAATCTG
LOC_Os09g39100
OsAffx.30197.1.S1_at--1013--8211Chr09:22445233..22445257 (25 bp)
GGCAATCTGCCCGTTGAAGAACAAG
LOC_Os09g39100
Target Sequence 
GCGGGTACCCATACGATGCATTCGACTACGTCATCAAGACAGGCATATCTTTGGACAATCGGGGAAATCCTCCGTATTAT
CCTCCTTACGAGAACCAGAAGCAGAAATGCAGATTCGACCCTAGGAAGCCTCCATTTGTGAAGATCGACGGCGAGTGCTT
GGTGCCGTCCGGCAACGAGACAGCTCTGAAGCTGGCAGTGTTAAGTCAGCCCGTGTCCGTCGTCATCACAATCAGCGATG
AGTTCCGCTCCTACCGCGGGGGTGTTTTCCGCGGACCCTGCGGAAGTAATCCGAATGTGGATAACCATGTGGTACTGGTG
GTGGGGTATGGAGTGACGACGGACAACATAAAATACTGGATCATCAAGAACTCTTGGGGTAAAACATGGGGGGAGTACGG
TTATATCCGCATGGAGCGGGATATCCTCAACAAGAATGGTATCTGTGGCATTACCACCTGGGCAATCTGCCCGTTGAAGA
ACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis