Browse Element(s) Details


OsAffx.18056.1.S1_at

Description tigr:9637.m03341
TID=OsAffx.18056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 135585 cysteine proteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3914011/11Papain family cysteine protease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39100OsAffx.30197.1.S1_at10/119+22445185..22447871Papain family cysteine protease containing protein, expressed
LOC_Os09g39110OsAffx.30198.1.S1_at10/119+22450128..22452723Papain family cysteine protease containing protein, expressed
LOC_Os09g39120OsAffx.30199.1.S1_at11/119+22455000..22457097Papain family cysteine protease containing protein
LOC_Os09g39130Os.21363.1.S1_at11/119+22458747..22461365expressed protein
LOC_Os09g39140OsAffx.18056.1.S1_at11/119+22465311..22466222Papain family cysteine protease containing protein
LOC_Os09g39150Os.47463.1.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39150Os.14491.2.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39160OsAffx.30200.1.S1_at10/119+22487767..22489686Papain family cysteine protease containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18056.1.S1_at--526--1231Chr09:22465918..22465942 (25 bp)
AGTTCGCCGCTAAGTACACCGGTGT
LOC_Os09g39140
OsAffx.18056.1.S1_at--231--9831Chr09:22465904..22465928 (25 bp)
TACACCGGTGTCCAGGTAGACGCTG
LOC_Os09g39140
OsAffx.18056.1.S1_at--5--9231Chr09:22465857..22465881 (25 bp)
TCCTGACGAGCAGCCAGTACTGGTC
LOC_Os09g39140
OsAffx.18056.1.S1_at--27--31Chr09:22465810..22465834 (25 bp)
ATTGGAGAGACCACGGAGCTGTCAC
LOC_Os09g39140
OsAffx.18056.1.S1_at--882--2591Chr09:22465559..22465583 (25 bp)
AACGACGACTGCATCAATGGCGGGA
LOC_Os09g39140
OsAffx.18056.1.S1_at--681--8971Chr09:22465507..22465531 (25 bp)
TGAACAACGGGATCGCCTTGGACGC
LOC_Os09g39140
OsAffx.18056.1.S1_at--1088--5411Chr09:22465451..22465475 (25 bp)
GAAGCCGAGAAGTTGCCCTGCAGGA
LOC_Os09g39140
OsAffx.18056.1.S1_at--326--2811Chr09:22465442..22465466 (25 bp)
AAGTTGCCCTGCAGGACGGAGCCAG
LOC_Os09g39140
OsAffx.18056.1.S1_at--444--3491Chr09:22465412..22465436 (25 bp)
CAGGCGGTCACATTGGACTGCATCA
LOC_Os09g39140
OsAffx.18056.1.S1_at--595--911Chr09:22465388..22465412 (25 bp)
AGGCAGTTGCCCCTCGACAACGAGG
LOC_Os09g39140
OsAffx.18056.1.S1_at--852--6011Chr09:22465352..22465376 (25 bp)
GAGAGGGTCTACATACAGCCCGTCT
LOC_Os09g39140
Target Sequence 
AGTTCGCCGCTAAGTACACCGGTGTCCAGGTAGACGCTGGCGCCGCCGTCGTGACTTCCGCTCCTGACGAGCAGCCAGTA
CTGGTCGGCGACGCGCCACCGGTGTGGGATTGGAGAGACCACGGAGCTGTCACTCCAGTCAAGGATCAAGGAAGTTGCGG
GAGTTGCTGGGCGTTCTCGGCGGTGGGGGCGGTGGAGGGGGTGAACGCGATCGCGACAGGGAACCTGCTGAGGCTGTCGG
AGCAGCAGTTGCTGGACTGCACCAACCCGAACGACGACTGCATCAATGGCGGGAGGGCAGAAAGAGCGATGCAGTACGTG
GTGAACAACGGGATCGCCTTGGACGCGAGCTGTCCGGGGCCCTACTACCCGCCCTACGAAGCCGAGAAGTTGCCCTGCAG
GACGGAGCCAGGCAGGCAGGCGGTCACATTGGACTGCATCAGGCAGTTGCCCCTCGACAACGAGGCCGCTCTCAAGGAGA
GGGTCTACATACAGCCCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis