Browse Element(s) Details


OsAffx.30198.1.S1_at

Description tigr:9637.m03339
TID=OsAffx.30198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=135585 cysteine proteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3911010/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39100OsAffx.30197.1.S1_at10/119+22445185..22447871Papain family cysteine protease containing protein, expressed
LOC_Os09g39110OsAffx.30198.1.S1_at10/119+22450128..22452723Papain family cysteine protease containing protein, expressed
LOC_Os09g39120OsAffx.30199.1.S1_at11/119+22455000..22457097Papain family cysteine protease containing protein
LOC_Os09g39130Os.21363.1.S1_at11/119+22458747..22461365expressed protein
LOC_Os09g39140OsAffx.18056.1.S1_at11/119+22465311..22466222Papain family cysteine protease containing protein
LOC_Os09g39150Os.47463.1.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39150Os.14491.2.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30198.1.S1_at--366--3471Chr09:22451933..22451957 (25 bp)
CAGGGATTCTGCTGACGTTGTCGGA
LOC_Os09g39110
OsAffx.30198.1.S1_at--619--9431Chr09:22451867..22451891 (25 bp)
TCGGGTACCCCAAGGATGCATTCAA
LOC_Os09g39110
OsAffx.30198.1.S1_at--485--2471Chr09:22451832..22451856 (25 bp)
AACACAGGCGTATCTTTGGACAGTC
LOC_Os09g39110
OsAffx.30198.1.S1_at--302--1231NONE
AGATTCGACCTTGAGAAGCCTCCAT
NONE
OsAffx.30198.1.S1_at--1097--1931Chr09:22451101..22451125 (25 bp)
ACGGCATATGCTTCGCTCAGTCTGG
LOC_Os09g39110
OsAffx.30198.1.S1_at--951--7171Chr09:22451082..22451106 (25 bp)
GTCTGGCGATGAAACTGCTCTGAAG
LOC_Os09g39110
OsAffx.30198.1.S1_at--734--7451Chr09:22451036..22451060 (25 bp)
GTGTCCGTTATCATCCAAATCAGCG
LOC_Os09g39110
OsAffx.30198.1.S1_at--725--7411Chr09:22450363..22450387 (25 bp)
GTGTTTTCGATGGACCGTGCGGAAC
LOC_Os09g39110
OsAffx.30198.1.S1_at--966--6911Chr09:22450219..22450243 (25 bp)
GTATGAAGCGCGACATCACGGACAA
LOC_Os09g39110
OsAffx.30198.1.S1_at--612--5251Chr09:22450189..22450213 (25 bp)
GAATCTGCGGCATCACTACGTGGGC
LOC_Os09g39110
OsAffx.30198.1.S1_at--15--3731Chr09:22450174..22450198 (25 bp)
CTACGTGGGCAATGTACCCCGTGAA
LOC_Os09g39110
Target Sequence 
CAGGGATTCTGCTGACGTTGTCGGAGCAGCAGGTTCTGGACTGCTCCGGCGCCGGCGACTGCGTCTTCGGGTACCCCAAG
GATGCATTCAACCACATCGTCAACACAGGCGTATCTTTGGACAGTCGCGGAAAACCTCCGTACTATCCTCCATACGAGGC
CCAGAAGAAGCAGTGCAGATTCGACCTTGAGAAGCCTCCATTTGTGAAGATCGACGGCATATGCTTCGCTCAGTCTGGCG
ATGAAACTGCTCTGAAGCTGGCAGTGTTAAGCCAACCCGTGTCCGTTATCATCCAAATCAGCGACAGATTCCATTCGTAC
CACGGGGGTGTTTTCGATGGACCGTGCGGAACGGAGACTAAAGATAACCACGTGGTGTTAGTGGTAGGGTATGGCGTGAC
CACAGATAATATTAAATACTGGATCGTCAAGAACTCTTGGGGCGAAGGCTGGGGTGAAAGTGGCTATATTCGTATGAAGC
GCGACATCACGGACAAGAACGGAATCTGCGGCATCACTACGTGGGCAATGTACCCCGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis