Browse Element(s) Details


OsAffx.6529.1.S1_at

Description tigr:9637.m03337
TID=OsAffx.6529.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=thiol protease sen102 precursor (ec 3.4.22.-). (daylily)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3909011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein
LOC_Os09g39050OsAffx.6527.1.S1_at11/119+22418365..22419612F-box domain containing protein, expressed
LOC_Os09g39060Os.26871.1.S1_at11/119+22420417..22422064Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39100OsAffx.30197.1.S1_at10/119+22445185..22447871Papain family cysteine protease containing protein, expressed
LOC_Os09g39110OsAffx.30198.1.S1_at10/119+22450128..22452723Papain family cysteine protease containing protein, expressed
LOC_Os09g39120OsAffx.30199.1.S1_at11/119+22455000..22457097Papain family cysteine protease containing protein
LOC_Os09g39130Os.21363.1.S1_at11/119+22458747..22461365expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6529.1.S1_at--939--7571Chr09:22438223..22438247 (25 bp)
GGGCGGCACTGCAGTACATCGTCAA
LOC_Os09g39090
OsAffx.6529.1.S1_at--385--7651Chr09:22438193..22438217 (25 bp)
GGGTCACCTTGGACCAATGCGGCAA
LOC_Os09g39090
OsAffx.6529.1.S1_at--1155--9871Chr09:22438161..22438185 (25 bp)
TACTACCCAGGTTACGAAGCCAAGA
LOC_Os09g39090
OsAffx.6529.1.S1_at--905--7311Chr09:22438083..22438107 (25 bp)
GTGAAGCCGGTTGCCAACACCGAGG
LOC_Os09g39090
OsAffx.6529.1.S1_at--285--471Chr09:22438026..22438050 (25 bp)
ATCTCCGTGGGAATCGACGCCAGTG
LOC_Os09g39090
OsAffx.6529.1.S1_at--735--3451Chr09:22438006..22438030 (25 bp)
CAGTGCCGACTTGCAACACTACAAA
LOC_Os09g39090
OsAffx.6529.1.S1_at--689--7671Chr09:22437838..22437862 (25 bp)
GGGTGTATTCACTGGTCGTTGCAAG
LOC_Os09g39090
OsAffx.6529.1.S1_at--342--811Chr09:22437776..22437800 (25 bp)
ATGGTGTGAATACTACCCCGGACAA
LOC_Os09g39090
OsAffx.6529.1.S1_at--1130--4611Chr09:22437707..22437731 (25 bp)
GCGAGGGTGGCTACATCCGTATGAA
LOC_Os09g39090
OsAffx.6529.1.S1_at--757--7151Chr09:22437659..22437683 (25 bp)
GTCTATGTGGCATCACCACGTATGC
LOC_Os09g39090
OsAffx.6529.1.S1_at--496--6731Chr09:22437627..22437651 (25 bp)
GTTACAAAGAAGTGTCCTTGCCCCG
LOC_Os09g39090
Target Sequence 
GGGCGGCACTGCAGTACATCGTCAAGAACGGGGTCACCTTGGACCAATGCGGCAAGCTTCCCTACTACCCAGGTTACGAA
GCCAAGAAGCTGGCCTGCAGGACGGTGGCAGGGAAGCCGCCGATCGTGAAGGTGGACGCCGTGAAGCCGGTTGCCAACAC
CGAGGCCGCCCTGCTGCTCAAAGTCTTCCAACAGCCCATCTCCGTGGGAATCGACGCCAGTGCCGACTTGCAACACTACA
AAAAGGGTGTATTCACTGGTCGTTGCAAGACGGCGCCCTTGAACCATGGCGTGGTGGTGGTGGGTTATGGTGTGAATACT
ACCCCGGACAAGACAAAATACTGGATCGTTAAGAACTCGTGGGGCAAAGGCTGGGGCGAGGGTGGCTACATCCGTATGAA
GCGTGACGTGGGAACCCCGGGGGGTCTATGTGGCATCACCACGTATGCCACATACGTTACAAAGAAGTGTCCTTGCCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis