Browse Element(s) Details


Os.26871.1.S1_at

Description gb:AK071733.1
DB_XREF= gi:32981756
TID=Os.26871.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107H18, full insert sequence.
FL= gb:AK071733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3906011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39010NANA9+22396042..22396463NA
LOC_Os09g39020Os.31867.1.S1_at11/119+22399706..22403882expressed protein
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein
LOC_Os09g39050OsAffx.6527.1.S1_at11/119+22418365..22419612F-box domain containing protein, expressed
LOC_Os09g39060Os.26871.1.S1_at11/119+22420417..22422064Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39100OsAffx.30197.1.S1_at10/119+22445185..22447871Papain family cysteine protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26871.1.S1_at--539--9271Chr09:22420939..22420963 (25 bp)
TCCTGCATGGCTACGCCGTGAAGCA
LOC_Os09g39060
Os.26871.1.S1_at--796--1531Chr09:22420895..22420919 (25 bp)
AGCTACCCGCCATACGAGGCCAAGG
LOC_Os09g39060
Os.26871.1.S1_at--1096--491Chr09:22420870..22420894 (25 bp)
ATCGGGCCTGCAGGAGGAATACTCC
LOC_Os09g39060
Os.26871.1.S1_at--776--311Chr09:22420852..22420876 (25 bp)
ATACTCCTGCAGTGCCCGTGGTGAA
LOC_Os09g39060
Os.26871.1.S1_at--816--2671Chr09:22420784..22420808 (25 bp)
AAGCGCAGCGTCTACAGGGCTCCGG
LOC_Os09g39060
Os.26871.1.S1_at--475--8571Chr09:22420640..22420664 (25 bp)
TGGTTGATTTGATCCATTCCTCCCG
LOC_Os09g39060
Os.26871.1.S1_at--697--9291Chr09:22420620..22420644 (25 bp)
TCCCGGCTTTTCTCCAGAATTGATT
LOC_Os09g39060
Os.26871.1.S1_at--503--6471Chr09:22420512..22420536 (25 bp)
GATAAACATGCATTTTGTCTGTCAT
LOC_Os09g39060
Os.26871.1.S1_at--58--8711Chr09:22420497..22420521 (25 bp)
TGTCTGTCATGTGCGATAAATGCGA
LOC_Os09g39060
Os.26871.1.S1_at--217--4611Chr09:22420476..22420500 (25 bp)
GCGAGTTTAATTTCTAGTGGTGTGT
LOC_Os09g39060
Os.26871.1.S1_at--293--3131Chr09:22420451..22420475 (25 bp)
AATTAAGGACCATGTTGCGCAATAC
LOC_Os09g39060
Target Sequence 
TCCTGCATGGCTACGCCGTGAAGCAGGGGATCAGCCCGGCTGGCAGCTACCCGCCATACGAGGCCAAGGNATCGGGCCTG
CAGGAGGAATACTCCTGCAGTGCCCGTGGTGAAGATGGACGGCGCAGTCGATGTGNCCGCCAGCGAGGCCGCTCTCAAGC
GCAGCGTCTACAGGGCTCCGGTCGCGGTCTCCATCGAAGCCACCCAAAGCCTCCAGCTCTACAAGGAGGTAATTAATCGA
ATTTAAATTACTTCAAATTAAGATTAATCGTTGTAGCAAAATGAGTTAGGGGAGGTGGTCTGGTTGATTTGATCCATTCC
TCCCGGCTTTTCTCCAGAATTGATTTAGCATCTGACTTTTTTTCCTTTTTTTTCAATCATATCTCTTATAATTGGTTTTT
CTCCTATATATAGTACATAAAAATGTGTGATAAACATGCATTTTGTCTGTCATGTGCGATAAATGCGAGTTTAATTTCTA
GTGGTGTGTAATTAAGGACCATGTTGCGCAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis