Browse Element(s) Details


Os.31867.1.S1_at

Description gb:AK106611.1
DB_XREF= gi:32991820
TID=Os.31867.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-F09, full insert sequence.
FL= gb:AK106611.1 gb:AK103005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3902011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38970Os.18044.1.S1_s_at11/119+22376424..22381905DHHC zinc finger domain containing protein, expressed
LOC_Os09g38980Os.27250.1.S1_at11/119+22382445..22386547RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os09g38990NANA9+22387273..22390065hypothetical protein
LOC_Os09g39000OsAffx.18055.1.S1_at11/119+22390829..22392247F-box protein interaction domain containing protein
LOC_Os09g39010NANA9+22396042..22396463NA
LOC_Os09g39020Os.31867.1.S1_at11/119+22399706..22403882expressed protein
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein
LOC_Os09g39050OsAffx.6527.1.S1_at11/119+22418365..22419612F-box domain containing protein, expressed
LOC_Os09g39060Os.26871.1.S1_at11/119+22420417..22422064Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31867.1.S1_at--345--2411Chr09:22403333..22403357 (25 bp)
AAACAAGATCCATCCCTTGACAGCG
LOC_Os09g39020
Os.31867.1.S1_at--88--1651Chr09:22403354..22403378 (25 bp)
AGCGCCACGCATACTGAAAAGATTT
LOC_Os09g39020
Os.31867.1.S1_at--720--2731Chr09:22403430..22403454 (25 bp)
AAGCAATTCTCAGCTCATCTCTGTT
LOC_Os09g39020
Os.31867.1.S1_at--371--6491Chr09:22403518..22403542 (25 bp)
GATAGCAACTTGACTGTTTCCATGA
LOC_Os09g39020
Os.31867.1.S1_at--1064--5131Chr09:22403557..22403581 (25 bp)
GCAAAGCCTACATGCAGTTGATTTT
LOC_Os09g39020
Os.31867.1.S1_at--307--6971Chr09:22403590..22403614 (25 bp)
GTACCAACCAATACTACTTCAGCAG
LOC_Os09g39020
Os.31867.1.S1_at--333--5511Chr09:22403676..22403700 (25 bp)
GAACAATAGCTACCTTTTCTCATGT
LOC_Os09g39020
Os.31867.1.S1_at--996--1731Chr09:22403707..22403731 (25 bp)
ACCATTGCTATTTTGTGTTATCCTA
LOC_Os09g39020
Os.31867.1.S1_at--396--4811Chr09:22403776..22403800 (25 bp)
GCTCTGCCACGTAGATCTGTGTGAT
LOC_Os09g39020
Os.31867.1.S1_at--1001--31Chr09:22403813..22403837 (25 bp)
ATTGTAAAGCTTCTGCGTGCAAAGA
LOC_Os09g39020
Os.31867.1.S1_at--464--1211Chr09:22403858..22403882 (25 bp)
AGTTATAGTGCTGTTAGTGCGTGCC
LOC_Os09g39020
Target Sequence 
AAACAAGATCCATCCCTTGACAGCGCCACGCATACTGAAAAGATTTCACTTGAATTAGATGTTGCGGATTTGAATACAAT
TGACCAGTCCAAACTGCAAGCAATTCTCAGCTCATCTCTGTTGCAAGCACTTGACAAGCTCAGAAGAGAGAAGCTCAACA
ACTCTGAAGAGGCTGAAGAGGTAAAGATAGCAACTTGACTGTTTCCATGAACTCTGAAGGAGATGCAAAGCCTACATGCA
GTTGATTTTAGTACGTAGTACCAACCAATACTACTTCAGCAGTACTGGAGCAGAATGACTACAAGGCATGGTTAAGCACC
AAGTATCATGTGATGTAGTATAGGAACAATAGCTACCTTTTCTCATGTAGTAGNACCATTGCTATTTTGTGTTATCCTAT
AAAACTAACTAATATTCTCGGGGAAGTACGGCTCTCTCACGCTGCTCTGCCACGTAGATCTGTGTGATCTGTCATGTGGA
ATTGTAAAGCTTCTGCGTGCAAAGAAATGGATTGAGTTTCTCTATAGTTATAGTGCTGTTAGTGCGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis