Browse Element(s) Details


Os.21363.1.S1_at

Description gb:AK069191.1
DB_XREF= gi:32979215
TID=Os.21363.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003N22, full insert sequence.
FL= gb:AK069191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3913011/11expressed protein
LOC_Os08g3485010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39100OsAffx.30197.1.S1_at10/119+22445185..22447871Papain family cysteine protease containing protein, expressed
LOC_Os09g39110OsAffx.30198.1.S1_at10/119+22450128..22452723Papain family cysteine protease containing protein, expressed
LOC_Os09g39120OsAffx.30199.1.S1_at11/119+22455000..22457097Papain family cysteine protease containing protein
LOC_Os09g39130Os.21363.1.S1_at11/119+22458747..22461365expressed protein
LOC_Os09g39140OsAffx.18056.1.S1_at11/119+22465311..22466222Papain family cysteine protease containing protein
LOC_Os09g39150Os.47463.1.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39150Os.14491.2.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21363.1.S1_at--16--3854Chr04:8030133..8030261 (24 bp)
CTGAATTTCACTTCCTTTTGCTAAA
NONE
Os.21363.1.S1_at--670--6792Chr09:22459206..22459230 (25 bp)
GTTTTCCTTGCCTCATAAATATTAG
LOC_Os09g39130
Os.21363.1.S1_at--890--10372Chr09:22459157..22459181 (25 bp)
TTTTCATATCATTTTGCAGTGCCAC
LOC_Os09g39130
Os.21363.1.S1_at--223--9052Chr09:22459143..22459167 (25 bp)
TGCAGTGCCACGTCCTATATAGGTT
LOC_Os09g39130
Os.21363.1.S1_at--319--10852Chr09:22459120..22459144 (25 bp)
TTGGCTTTGCGCAACCTTTTACATC
LOC_Os09g39130
Os.21363.1.S1_at--953--4292Chr09:22459106..22459130 (25 bp)
CCTTTTACATCGTTGCTCGATTCGT
LOC_Os09g39130
Os.21363.1.S1_at--891--6192Chr09:22458945..22458969 (25 bp)
GAGGCTAATAAGCAGTTCCATTCTT
LOC_Os09g39130
Os.21363.1.S1_at--191--3591Chr09:22458927..22458951 (25 bp)
CATTCTTGATGAACTTTCTGTACGT
LOC_Os09g39130
Os.21363.1.S1_at--228--5692Chr09:22458889..22458913 (25 bp)
GACTATGGTTTCCTAAGTGTTTTTG
LOC_Os09g39130
Os.21363.1.S1_at--321--1052Chr09:22458815..22458839 (25 bp)
AGGTGCACATGTCACTATGTAATAT
LOC_Os09g39130
Os.21363.1.S1_at--631--7072Chr09:22458797..22458821 (25 bp)
GTAATATACTCCAATCTTGCTCTTT
LOC_Os09g39130
Target Sequence 
CTGAATTTCACTTCCTTTTGCTAAAAAGTAATTTGAATACAACATTTTTTAAACCATATAATACAATATTAATGTTTTCC
TTGCCTCATAAATATTAGAATTATCATATATTTGTTTATCTATTTTCATATCATTTTGCAGTGCCACGTCCTATATAGGT
TGGCTTTGCGCAACCTTTTACATCGTTGCTCGATTCGTNCATNCACATTGTTANCNTGGGGGAGCTNAGACTNNATNCTT
ATGAAGCTTGNATACTTGATCAGTAAATTNACATTTTTTTNGCAGGGATCAGTAAATTACTTAGACTGCTGCTAAAAACA
GACAAGTATGAACGTTTAAAAAGGAGGCTAATAAGCAGTTCCATTCTTGATGAACTTTCTGTACGTTNNAAACNGTATTT
GACTATGGTTTCCTAAGTGTTTTTGAGTTTATATAGTACTCTTATCCATATTAATTGACTCNGTGGGCTGTAANAAGGTG
CACATGTCACTATGTAATATACTCCAATCTTGCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis