Browse Element(s) Details


OsAffx.18389.1.S1_at

Description tigr:9638.m02102
TID=OsAffx.18389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2497011/11hypothetical protein
LOC_Os09g389601/11Potassium transporter 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24920NANA10+12496633..12500980retrotransposon, putative, centromere-specific
LOC_Os10g24940Os.50367.1.A1_at11/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.51229.1.S1_at5/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.38268.3.S1_x_at2/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.54892.1.S1_at1/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.7388.2.S1_x_at1/1110+12502939..12512359expressed protein
LOC_Os10g24954OsAffx.16407.3.S1_s_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.3.S1_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.27026.1.A1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.2.S1_x_at6/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_at2/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24970OsAffx.18389.1.S1_at11/1110+12523918..12524400hypothetical protein
LOC_Os10g24980OsAffx.17094.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.25548.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.17842.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein
LOC_Os10g25010Os.50669.1.S1_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25010Os.11064.1.S1_a_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25020OsAffx.193.1.S1_x_at8/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020OsAffx.193.1.S1_at2/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020Os.5164.1.S1_at1/1110+12548024..12548911Red chlorophyll catabolite reductase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18389.1.S1_at--88--10331Chr10:12524186..12524210 (25 bp)
TTTACACGTTCCTCAACCCGGTGCT
LOC_Os10g24970
OsAffx.18389.1.S1_at--929--3391Chr10:12524142..12524166 (25 bp)
CAGCTGCCGCCGCTAGCAGACAAGG
LOC_Os10g24970
OsAffx.18389.1.S1_at--855--4851Chr10:12524131..12524155 (25 bp)
GCTAGCAGACAAGGGCTCATCCGTA
LOC_Os10g24970
OsAffx.18389.1.S1_at--164--2231Chr10:12524123..12524147 (25 bp)
ACAAGGGCTCATCCGTACTGTGCTA
LOC_Os10g24970
OsAffx.18389.1.S1_at--294--4831Chr10:12524117..12524141 (25 bp)
GCTCATCCGTACTGTGCTACACGAA
LOC_Os10g24970
OsAffx.18389.1.S1_at--777--8691Chr10:12524105..12524129 (25 bp)
TGTGCTACACGAAGGACACCGAGCT
LOC_Os10g24970
OsAffx.18389.1.S1_at--1160--9851Chr10:12524100..12524124 (25 bp)
TACACGAAGGACACCGAGCTCCCGG
LOC_Os10g24970
OsAffx.18389.1.S1_at--265--3812Chr10:12524082..12524106 (25 bp)
CTCCCGGCGATCACGCTGGTGTTCG
LOC_Os10g24970
OsAffx.18389.1.S1_at--127--2931Chr10:12524052..12524076 (25 bp)
AAGGACGCCGCCATGAAGCTGGCGC
LOC_Os10g24970
OsAffx.18389.1.S1_at--1038--8451Chr10:12524033..12524057 (25 bp)
TGGCGCCGGAGCACTACTCGTACAA
LOC_Os10g24970
OsAffx.18389.1.S1_at--714--5111Chr10:12524023..12524047 (25 bp)
GCACTACTCGTACAAGAGGAGCGAT
LOC_Os10g24970
Target Sequence 
TTTACACGTTCCTCAACCCGGTGCTCTTCGACCACCTCAAGAAGCAGCTGCCGCCGCTAGCAGACAAGGGCTCATCCGTA
CTGTGCTACACGAAGGACACCGAGCTCCCGGCGATCACGCTGGTGTTCGCCGGCAAGGACGCCGCCATGAAGCTGGCGCC
GGAGCACTACTCGTACAAGAGGAGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis