Browse Element(s) Details


Os.5164.1.S1_at

Description gb:CB655594
DB_XREF= gi:29659319
DB_XREF=OSJNEc09C19.r
CLONE=OSJNEc09C19
TID=Os.5164.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.5164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative red chlorophyll catabolite reductase (OSJNBb0061I18.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2503011/11Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g250201/11Red chlorophyll catabolite reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein
LOC_Os10g25010Os.50669.1.S1_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25010Os.11064.1.S1_a_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25020OsAffx.193.1.S1_x_at8/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020OsAffx.193.1.S1_at2/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020Os.5164.1.S1_at1/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25030Os.5164.1.S1_at11/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_x_at6/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_at1/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25040OsAffx.30524.1.S1_x_at11/1110+12560680..12563012Red chlorophyll catabolite reductase family protein, expressed
LOC_Os10g25060Os.46544.1.A1_at11/1110+12567955..12570741expressed protein
LOC_Os10g25060Os.46544.2.S1_x_at10/1110+12567955..12570741expressed protein
LOC_Os10g25070NANA10+12572212..12574345retrotransposon protein, putative, unclassified
LOC_Os10g25080NANA10+12576583..12582158retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0015996biological_processchlorophyll catabolism
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5164.1.S1_at--685--311Chr10:12555413..12555437 (25 bp)
ATACCGATCGCGATCCCTCTTCGTG
LOC_Os10g25030
Os.5164.1.S1_at--1050--10611Chr10:12555394..12555418 (25 bp)
TTCGTGCGCAGCACCTTCTCACTGA
LOC_Os10g25030
Os.5164.1.S1_at--467--1511Chr10:12555385..12555409 (25 bp)
AGCACCTTCTCACTGACAGCAATAC
LOC_Os10g25030
Os.5164.1.S1_at--530--9692Chr10:12555376..12555400 (25 bp)
TCACTGACAGCAATACTGATGAGCA
LOC_Os10g25030
Os.5164.1.S1_at--141--7831Chr10:12555083..12555107 (25 bp)
GGTACAAGAGGCCTAGCTTTAGAAC
LOC_Os10g25030
Os.5164.1.S1_at--1071--6211Chr10:12555076..12555100 (25 bp)
GAGGCCTAGCTTTAGAACTGTGACC
LOC_Os10g25030
Os.5164.1.S1_at--1144--5451Chr10:12555062..12555086 (25 bp)
GAACTGTGACCAGGAATTCATCTGT
LOC_Os10g25030
Os.5164.1.S1_at--9--8231Chr10:12555050..12555074 (25 bp)
GGAATTCATCTGTACATCATTCGAA
LOC_Os10g25030
Os.5164.1.S1_at--439--7071Chr10:12555024..12555048 (25 bp)
GTAATGTTAGTAGTCTTTTGTCCCT
LOC_Os10g25030
Os.5164.1.S1_at--103--8791Chr10:12555020..12555044 (25 bp)
TGTTAGTAGTCTTTTGTCCCTTTTG
LOC_Os10g25030
Os.5164.1.S1_at--411--7151Chr10:12555012..12555036 (25 bp)
GTCTTTTGTCCCTTTTGCTTGAACA
LOC_Os10g25030
Target Sequence 
ATACCGATCGCGATCCCTCTTCGTGCGCAGCACCTTCTCACTGACAGCAATACTGATGAGCATCGACTGTGGGCAAGGAG
GAGAGGGTACCTTGGAAGAGATAGTGCGTGGTCAACTAGCAACAGCTGCTAGGGCACTTCTTCAAATTTGGCTTGATAGT
TGTGCTGATCATACTTCAGAGATGGAAGAAGGCGAGAGAGAAAACATGATAAAGAGGGACCAAATTGTAAGGTCCAAGTC
AATCGAGGTCGACCTGACTTCAAATTTGCCGAGGATGTTTGGTCCCGATGTCGCAGACCGAGTCATAGCTGAAATCCAGA
AGGCCTTTGGGGTACAAGAGGCCTAGCTTTAGAACTGTGACCAGGAATTCATCTGTACATCATTCGAAAGTAATGTTAGT
AGTCTTTTGTCCCTTTTGCTTGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis