Browse Element(s) Details


OsAffx.30524.1.S1_x_at

Description tigr:9638.m02109
TID=OsAffx.30524.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative red chlorophyll catabolite reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2504011/11Red chlorophyll catabolite reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein
LOC_Os10g25010Os.50669.1.S1_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25010Os.11064.1.S1_a_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25020OsAffx.193.1.S1_x_at8/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020OsAffx.193.1.S1_at2/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020Os.5164.1.S1_at1/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25030Os.5164.1.S1_at11/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_x_at6/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_at1/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25040OsAffx.30524.1.S1_x_at11/1110+12560680..12563012Red chlorophyll catabolite reductase family protein, expressed
LOC_Os10g25060Os.46544.1.A1_at11/1110+12567955..12570741expressed protein
LOC_Os10g25060Os.46544.2.S1_x_at10/1110+12567955..12570741expressed protein
LOC_Os10g25070NANA10+12572212..12574345retrotransposon protein, putative, unclassified
LOC_Os10g25080NANA10+12576583..12582158retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0015996biological_processchlorophyll catabolism
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30524.1.S1_x_at--21--8371Chr10:12561246..12561270 (25 bp)
GGCGGAGGCGCCATCGACATCACCG
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--863--1811Chr10:12561191..12561215 (25 bp)
ACGCGCCGCACCTCGTCATGGAGTT
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--584--3791Chr10:12561180..12561204 (25 bp)
CTCGTCATGGAGTTCATCCAGGGCG
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--132--9631Chr10:12561176..12561200 (25 bp)
TCATGGAGTTCATCCAGGGCGGGCC
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--588--9871Chr10:12561090..12561114 (25 bp)
TACATCCACCGGTACTACGCCGCCA
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--220--9431Chr10:12560957..12560981 (25 bp)
TCGTGGCCGACGTCCAGTGCGGCGA
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--783--8112Chr10:12560908..12560932 (25 bp)
GGACGGGATCGTCCGCGGCGAGCTC
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--103--4351Chr10:12560873..12560897 (25 bp)
CCATGGACGTGCTCGGCGTCTGGCT
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--511--9451Chr10:12560861..12560885 (25 bp)
TCGGCGTCTGGCTCGAGCACTGCGC
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--67--1631Chr10:12560756..12560780 (25 bp)
AGCTGGAGGTCAACCTGGCGGCGAA
LOC_Os10g25040
OsAffx.30524.1.S1_x_at--435--2631Chr10:12560733..12560757 (25 bp)
AACCTGCCGAGGATGTTCGACGCCG
LOC_Os10g25040
Target Sequence 
GGCGGAGGCGCCATCGACATCACCGCCCTCATCGTCAACCTCAACGGCGCCACCGACGCGCCGCACCTCGTCATGGAGTT
CATCCAGGGCGGGCCGGCCTCCCTCATCGTCCTCCTCGACCTCCTCCCGCGCGTCGACCTCCCGCTCCACCCCTCCTACA
TCCACCGGTACTACGCCGCCACGGGCCTCGACGCCCGCGCCCGCCGCCGGGTCGCCGGCCTGGTGCCGCAGTCCCGCCCC
TACGTCTCGCCGTCGCTGCTCGTCCGCAGCCTGTGGTCGCCGGCGGCCGTCGTGGCCGACGTCCAGTGCGGCGAGGGCCC
TGGAGGGGCGGCGGCGCTGGACGGGATCGTCCGCGGCGAGCTCGCCGCCACGGCCATGGACGTGCTCGGCGTCTGGCTCG
AGCACTGCGCCGGCGGCGGCGGCGGCGGGGAGATGGAGGCGGCGGAGAGGGAGCGGATGGTGGCGAGGGACAGGAAGGTG
GCGGCGGCGGAGCTGGAGGTCAACCTGGCGGCGAACCTGCCGAGGATGTTCGACGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30524.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis