Browse Element(s) Details


Os.54065.1.S1_at

Description gb:AK101651.1
DB_XREF= gi:32986860
TID=Os.54065.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057B06, full insert sequence.
FL= gb:AK101651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2500010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24940Os.50367.1.A1_at11/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.51229.1.S1_at5/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.38268.3.S1_x_at2/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.54892.1.S1_at1/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.7388.2.S1_x_at1/1110+12502939..12512359expressed protein
LOC_Os10g24954OsAffx.16407.3.S1_s_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.3.S1_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.27026.1.A1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.2.S1_x_at6/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_at2/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24970OsAffx.18389.1.S1_at11/1110+12523918..12524400hypothetical protein
LOC_Os10g24980OsAffx.17094.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.25548.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.17842.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein
LOC_Os10g25010Os.50669.1.S1_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25010Os.11064.1.S1_a_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25020OsAffx.193.1.S1_x_at8/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020OsAffx.193.1.S1_at2/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25020Os.5164.1.S1_at1/1110+12548024..12548911Red chlorophyll catabolite reductase, putative
LOC_Os10g25030Os.5164.1.S1_at11/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_x_at6/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25030OsAffx.193.1.S1_at1/1110+12554969..12556910Red chlorophyll catabolite reductase, putative, expressed
LOC_Os10g25040OsAffx.30524.1.S1_x_at11/1110+12560680..12563012Red chlorophyll catabolite reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54065.1.S1_at--807--9651Chr10:12537166..12537190 (25 bp)
TCAGACGTATGTCTACATGCTTGGC
LOC_Os10g25000
Os.54065.1.S1_at--430--1731Chr10:12536994..12537018 (25 bp)
ACCAGTGGTCTGCTTATTGCGGAGA
LOC_Os10g25000
Os.54065.1.S1_at--453--6031Chr10:12536889..12536997 (25 bp)
GAGATGCCAATACATGTTTCGGAGA
LOC_Os10g25000
Os.54065.1.S1_at--319--2911Chr10:12536795..12536819 (25 bp)
AAGGTTATACTTTGTGACTTCTATT
LOC_Os10g25000
Os.54065.1.S1_at--490--7631Chr10:12536719..12536743 (25 bp)
GGGACTCCTATGGTTTCTCAATGCC
LOC_Os10g25000
Os.54065.1.S1_at--915--6831Chr10:12536707..12536731 (25 bp)
GTTTCTCAATGCCTTGATACTTTCA
LOC_Os10g25000
Os.54065.1.S1_at--919--6471Chr10:12536692..12536716 (25 bp)
GATACTTTCAATACTGGACCATAGC
LOC_Os10g25000
Os.54065.1.S1_at--385--171Chr10:12536656..12536680 (25 bp)
ATTTTCCTATTGTAGCCTGATTTGT
LOC_Os10g25000
Os.54065.1.S1_at--799--6511Chr10:12536638..12536662 (25 bp)
GATTTGTAATACCATGGAGTCCTCT
LOC_Os10g25000
Os.54065.1.S1_at--1095--6091Chr10:12536622..12536646 (25 bp)
GAGTCCTCTACCAAATGCTTTCAAA
LOC_Os10g25000
Os.54065.1.S1_at--721--4871NONE
GCTTTCAAACACTACAGCAGGTTTT
NONE
Target Sequence 
TCAGACGTATGTCTACATGCTTGGCAGCAGATGGAATCGTGATTAACATGGTTGTTGGTGGCGAGGTAGCCACTCTCAAG
GCTCTAGAAGAAACCAGTGGTCTGCTTATTGCGGAGATGCCAATACATGTTTCGGAGATATTATGACTGTCTCAATTGAA
TGGCATTCAGTAGTTATTTCCTTAGGAACTAACTACTCAAGTGATCAAAGGTTATACTTTGTGACTTCTATTTGTGAATT
GCTTAGAACACAGTAGAAAACAGGACTCAGTGAAAATAAAGAGGGGACTCCTATGGTTTCTCAATGCCTTGATACTTTCA
ATACTGGACCATAGCAGTTTACTATAATTTTCCTATTGTAGCCTGATTTGTAATACCATGGAGTCCTCTACCAAATGCTT
TCAAACACTACAGCAGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis