Browse Element(s) Details


Os.51229.1.S1_at

Description gb:AK062290.1
DB_XREF= gi:32972308
TID=Os.51229.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E06, full insert sequence.
FL= gb:AK062290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1516010/11expressed protein
LOC_Os10g249405/11expressed protein
LOC_Os01g458803/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15130OsAffx.28454.1.S1_s_at11/117+8679898..8681132hypothetical protein
LOC_Os07g15130OsAffx.28454.1.S1_at8/117+8679898..8681132hypothetical protein
LOC_Os07g15130OsAffx.28454.2.S1_at8/117+8679898..8681132hypothetical protein
LOC_Os07g15140Os.47463.1.S1_x_at6/117+8688022..8691254transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15140Os.14491.2.S1_x_at4/117+8688022..8691254transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150Os.27026.1.A1_x_at3/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150Os.40028.1.A1_at2/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150Os.27037.1.A1_at1/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15150OsAffx.16407.2.S1_x_at1/117+8694676..8700054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15160Os.51229.1.S1_at10/117+8700816..8704304expressed protein
LOC_Os07g15160Os.50367.1.A1_at6/117+8700816..8704304expressed protein
LOC_Os07g15160Os.52566.1.S1_at1/117+8700816..8704304expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51229.1.S1_at--108--1011Chr07:8702761..8702785 (25 bp)
AGGTCCTCACATATTAGAAAAGGTA
LOC_Os07g15160
Os.51229.1.S1_at--702--154Chr10:12511222..12511246 (25 bp)
ATTATGTGACTAATTAACCGTCCAC
LOC_Os10g24940
Os.51229.1.S1_at--344--3134Chr10:12511233..12511257 (25 bp)
AATTAACCGTCCACAATATGCTTGC
LOC_Os10g24940
Os.51229.1.S1_at--1063--1774Chr10:12511238..12511262 (25 bp)
ACCGTCCACAATATGCTTGCTTAAA
LOC_Os10g24940
Os.51229.1.S1_at--458--9851NONE
TAAATTCCATTCTTGCTGCTGAGTG
NONE
Os.51229.1.S1_at--1069--9534Chr08:637459..637483 (25 bp)
TCTTCACAGTTTAGTTCACGTATGG
NONE
Os.51229.1.S1_at--814--6754Chr08:637472..637496 (25 bp)
GTTCACGTATGGCTTTGTATGTATT
NONE
Os.51229.1.S1_at--294--8294Chr08:637482..637506 (25 bp)
GGCTTTGTATGTATTAGGTGTTTTC
NONE
Os.51229.1.S1_at--645--13Chr10:12511323..12511347 (25 bp)
ATTAGGTGTTTTCTGAAGACGGTGA
LOC_Os10g24940
Os.51229.1.S1_at--350--2276Chr10:12511351..12511375 (25 bp)
AAATCACCTATAAGATCTGATCTTT
LOC_Os10g24940
Os.51229.1.S1_at--102--6415Chr08:637535..637559 (25 bp)
GATCTGATCTTTGGAGGATAATATC
NONE
Target Sequence 
AGGTCCTCACATATTAGAAAAGGTATATTATGTGACTAATTAACCGTCCACAATATGCTTGCTTAAATTCCATTCTTGCT
GCTGAGTGCTTCTTCACAGTTTAGTTCACGTATGGCTTTGTATGTATTAGGTGTTTTCTGAAGACGGTGAAATAAATCAC
CTATAAGATCTGATCTTTGGAGGATAATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis