Browse Element(s) Details


OsAffx.28454.1.S1_at

Description tigr:9634.m02803
TID=OsAffx.28454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g292609/11hypothetical protein
LOC_Os07g151308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29220Os.14187.1.S1_at10/116+16675495..16682026Formate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g29230OsAffx.15659.1.S1_at11/116+16683094..16683462hypothetical protein
LOC_Os06g29240OsAffx.27861.1.S1_at11/116+16686153..16686944hypothetical protein
LOC_Os06g29240OsAffx.27101.1.S1_at1/116+16686153..16686944hypothetical protein
LOC_Os06g29250NANA6+16692824..16693456expressed protein
LOC_Os06g29260OsAffx.28454.1.S1_s_at11/116+16701260..16702064hypothetical protein
LOC_Os06g29260OsAffx.28454.1.S1_at9/116+16701260..16702064hypothetical protein
LOC_Os06g29260OsAffx.28454.2.S1_at1/116+16701260..16702064hypothetical protein
LOC_Os06g29270OsAffx.940.1.S1_x_at1/116+16705403..16712256retrotransposon protein, putative, unclassified
LOC_Os06g29280Os.46314.2.S1_x_at4/116+16713281..16716479retrotransposon protein, putative, unclassified
LOC_Os06g29290NANA6+16718411..16718803pentatricopeptide, putative
LOC_Os06g29300OsAffx.19542.3.S1_x_at7/116+16718985..16726542retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29300OsAffx.25502.2.S1_at1/116+16718985..16726542retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29300Os.4509.1.S1_x_at1/116+16718985..16726542retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28454.1.S1_at--446--9032Chr07:8680505..8680872 (25 bp)
TGCAGACTAATTCAGCTTATAGGCA
LOC_Os07g15130
OsAffx.28454.1.S1_at--359--5051Chr07:8680506..8680873 (25 bp)
GCAGACTAATTCAGCTTATAGGCAA
LOC_Os07g15130
OsAffx.28454.1.S1_at--50--3411Chr06:16701448..16701806 (25 bp)
CAGACTAATTCAGCTTATAGGCAAG
LOC_Os06g29260
OsAffx.28454.1.S1_at--682--1391Chr06:16701449..16701807 (25 bp)
AGACTAATTCAGCTTATAGGCAAGG
LOC_Os06g29260
OsAffx.28454.1.S1_at--225--5712Chr07:8680509..8680876 (25 bp)
GACTAATTCAGCTTATAGGCAAGGT
LOC_Os07g15130
OsAffx.28454.1.S1_at--615--2012Chr07:8680510..8680877 (25 bp)
ACTAATTCAGCTTATAGGCAAGGTT
LOC_Os07g15130
OsAffx.28454.1.S1_at--643--9732Chr07:8680512..8680879 (25 bp)
TAATTCAGCTTATAGGCAAGGTTGT
LOC_Os07g15130
OsAffx.28454.1.S1_at--115--5533Chr07:8680885..8680909 (25 bp)
GAAAAACACATATAACCAAGAGATT
LOC_Os07g15130
OsAffx.28454.1.S1_at--984--3213Chr07:8680901..8680925 (25 bp)
CAAGAGATTTGATTTTTACCTGAAC
LOC_Os07g15130
OsAffx.28454.1.S1_at--1038--2772Chr07:8680902..8680926 (25 bp)
AAGAGATTTGATTTTTACCTGAACA
LOC_Os07g15130
OsAffx.28454.1.S1_at--352--4631NONE
GCGTGCAGGTCGAGTCAAAGGTGGG
NONE
Target Sequence 
TGCAGACTAATTCAGCTTATAGGCAAGGTTGTAAAAAGAAAAACACATATAACCAAGAGATTTGATTTTTACCTGAACAA
GGGGACTTCCTTGATGTCGGAAGATGAGGTGGAGGCAGGCACCAGAGGTGGAGGCGATGGGGAGGCGGCGGAGGAGGTGG
GGAAGAGGGTGGAGTCAACTGCGGCAATGGGAAGGCGTTGGGCGGAGGAGCCGATAGCGGAAGCCAGCGTGCAGGTCGAG
TCAAAGGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis