Browse Element(s) Details


OsAffx.27101.1.S1_at

Description tigr:9633.m02858
TID=OsAffx.27101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3132010/11hypothetical protein
LOC_Os06g292401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31254Os.49416.1.S1_at10/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.39411.1.A1_at4/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.45957.4.S1_x_at1/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31280Os.54789.1.S1_at10/115+18102682..18104050Gibberellin regulated protein, expressed
LOC_Os05g31290OsAffx.4487.1.S1_at11/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31290OsAffx.27100.1.S1_at10/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31300NANA5+18116949..18118275transposon protein, putative, Mariner sub-class
LOC_Os05g31310OsAffx.4488.1.S1_at11/115+18119606..18120087hypothetical protein
LOC_Os05g31310OsAffx.31273.1.S1_x_at1/115+18119606..18120087hypothetical protein
LOC_Os05g31320OsAffx.27101.1.S1_at10/115+18121933..18124518hypothetical protein
LOC_Os05g31320OsAffx.30485.1.S1_at1/115+18121933..18124518hypothetical protein
LOC_Os05g31330NANA5+18128706..18130556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31340NANA5+18134048..18139714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31350NANA5+18142163..18143574hypothetical protein
LOC_Os05g31360OsAffx.27103.1.S1_x_at4/115+18147602..18148027hypothetical protein
LOC_Os05g31370OsAffx.27103.1.S1_x_at10/115+18148817..18149997hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27101.1.S1_at--51--5711Chr05:18122468..18122492 (25 bp)
GACTAGCAGTGACCAATCATCCAAG
LOC_Os05g31320
OsAffx.27101.1.S1_at--571--10851Chr05:18122640..18122664 (25 bp)
TTGGCGGCGGACACAAGGCAAATAA
LOC_Os05g31320
OsAffx.27101.1.S1_at--839--5152Chr05:18123263..18123287 (25 bp)
GAACCATCCTAACCGTCATAAGGGC
LOC_Os05g31320
OsAffx.27101.1.S1_at--1035--3471NONE
CAGGCTCTTGGCCAAAGGTCATAAA
NONE
OsAffx.27101.1.S1_at--800--7811Chr05:18123928..18123952 (25 bp)
GGTCATAAATTACCCTCGTTTGTTG
LOC_Os05g31320
OsAffx.27101.1.S1_at--356--4111Chr05:18124194..18124218 (25 bp)
CGCAATTATCTCATGTTGGGCCTTT
LOC_Os05g31320
OsAffx.27101.1.S1_at--205--10771Chr05:18124209..18124233 (25 bp)
TTGGGCCTTTATGCCGGATAGTAAG
LOC_Os05g31320
OsAffx.27101.1.S1_at--644--7751Chr05:18124239..18124263 (25 bp)
GGTGTTGGCGACTGTTATTGACAAA
LOC_Os05g31320
OsAffx.27101.1.S1_at--618--4412Chr06:16686711..16686774 (25 bp)
GCCACCAATACCTGCATCAATCAAA
LOC_Os06g29240
OsAffx.27101.1.S1_at--1056--7471Chr05:18124437..18124461 (25 bp)
GTGGGCTAGGAACTACACTCAAAAA
LOC_Os05g31320
OsAffx.27101.1.S1_at--897--3791Chr05:18124464..18124488 (25 bp)
CTCCAAGGGCCTTCATTCGCAGAAA
LOC_Os05g31320
Target Sequence 
GACTAGCAGTGACCAATCATCCAAGGAATCAAGAAAAATGGCACTATGGACCATGGAGAAAATGGTTGGTGTGGCCATGT
GTGGGTGGGTTGGCGGCGGACACAAGGCAAATAAGTGTAGTGAACACATTTTAAGTCGATTGCTAGAATTTGGAGGGGAG
GATTGGAGGGCCCACAAGTCAGTGGAAACTGGCTTAAAATGGGACCGAACCATCCTAACCGTCATAAGGGCCCCACCAAT
CAGGCTCTTGGCCAAAGGTCATAAATTACCCTCGTTTGTTGGGTGCTCCACGGAAAGTGAGGGTACATGGTACGCAATTA
TCTCATGTTGGGCCTTTATGCCGGATAGTAAGGGGTGGGTGTTGGCGACTGTTATTGACAAATTTTATGCCACCAATACC
TGCATCAATCAAAGAAATAAAACATCCAACATAGTGATAGGGTTAATTCTGACATATTCCATGAGTGTTGGTGTATATTT
GTATGCAGAGTGGGCTAGGAACTACACTCAAAAAGACTCCAAGGGCCTTCATTCGCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis