Browse Element(s) Details


OsAffx.4487.1.S1_at

Description tigr:9633.m02854
TID=OsAffx.4487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3129011/11Acyl carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31230Os.17230.1.S1_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17230.1.S2_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17183.1.A1_s_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31254Os.49416.1.S1_at10/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.39411.1.A1_at4/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.45957.4.S1_x_at1/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31280Os.54789.1.S1_at10/115+18102682..18104050Gibberellin regulated protein, expressed
LOC_Os05g31290OsAffx.4487.1.S1_at11/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31290OsAffx.27100.1.S1_at10/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31300NANA5+18116949..18118275transposon protein, putative, Mariner sub-class
LOC_Os05g31310OsAffx.4488.1.S1_at11/115+18119606..18120087hypothetical protein
LOC_Os05g31310OsAffx.31273.1.S1_x_at1/115+18119606..18120087hypothetical protein
LOC_Os05g31320OsAffx.27101.1.S1_at10/115+18121933..18124518hypothetical protein
LOC_Os05g31320OsAffx.30485.1.S1_at1/115+18121933..18124518hypothetical protein
LOC_Os05g31330NANA5+18128706..18130556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31340NANA5+18134048..18139714retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4487.1.S1_at--521--1431Chr05:18111830..18111854 (25 bp)
AGAACTTCCAGAAGGTCGAGCCCTC
LOC_Os05g31290
OsAffx.4487.1.S1_at--701--9191Chr05:18111807..18111831 (25 bp)
TCCAAGGTGAGCACGGTCGCCGACG
LOC_Os05g31290
OsAffx.4487.1.S1_at--503--8351Chr05:18111772..18111796 (25 bp)
GGCGGATTCGGATCTAGGCGTGCTC
LOC_Os05g31290
OsAffx.4487.1.S1_at--326--4811Chr05:18111751..18111775 (25 bp)
GCTCGGGCTGTGTAGTGTATTTTTT
LOC_Os05g31290
OsAffx.4487.1.S1_at--894--6871Chr05:18111735..18111759 (25 bp)
GTATTTTTTATTCGCGTCGCATTCC
LOC_Os05g31290
OsAffx.4487.1.S1_at--984--10211Chr05:18111727..18111751 (25 bp)
TATTCGCGTCGCATTCCTTTTGCTT
LOC_Os05g31290
OsAffx.4487.1.S1_at--1090--4231Chr05:18111702..18111726 (25 bp)
CCTGGAATGGAGAGGATTTTCTTCT
LOC_Os05g31290
OsAffx.4487.1.S1_at--470--10311Chr05:18111685..18111709 (25 bp)
TTTCTTCTTCCGAAAAGAGATTCTG
LOC_Os05g31290
OsAffx.4487.1.S1_at--747--2431Chr05:18111673..18111697 (25 bp)
AAAAGAGATTCTGTATATGCGTAAG
LOC_Os05g31290
OsAffx.4487.1.S1_at--712--8591Chr05:18111634..18111658 (25 bp)
TGGTCTTGGTGGATCAATTGGAGCC
LOC_Os05g31290
OsAffx.4487.1.S1_at--673--3171Chr05:18111619..18111643 (25 bp)
AATTGGAGCCGAGCCTGAAACATTA
LOC_Os05g31290
Target Sequence 
AGAACTTCCAGAAGGTCGAGCCCTCCAAGGTGAGCACGGTCGCCGACGCGCACCGCACGGCGGATTCGGATCTAGGCGTG
CTCGGGCTGTGTAGTGTATTTTTTATTCGCGTCGCATTCCTTTTGCTTCCTGGAATGGAGAGGATTTTCTTCTTCCGAAA
AGAGATTCTGTATATGCGTAAGAAGTTGCAAAGTTTTGGTCTTGGTGGATCAATTGGAGCCGAGCCTGAAACATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis