Browse Element(s) Details


OsAffx.4488.1.S1_at

Description tigr:9633.m02857
TID=OsAffx.4488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3131011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31254Os.49416.1.S1_at10/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.39411.1.A1_at4/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.45957.4.S1_x_at1/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31280Os.54789.1.S1_at10/115+18102682..18104050Gibberellin regulated protein, expressed
LOC_Os05g31290OsAffx.4487.1.S1_at11/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31290OsAffx.27100.1.S1_at10/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31300NANA5+18116949..18118275transposon protein, putative, Mariner sub-class
LOC_Os05g31310OsAffx.4488.1.S1_at11/115+18119606..18120087hypothetical protein
LOC_Os05g31310OsAffx.31273.1.S1_x_at1/115+18119606..18120087hypothetical protein
LOC_Os05g31320OsAffx.27101.1.S1_at10/115+18121933..18124518hypothetical protein
LOC_Os05g31320OsAffx.30485.1.S1_at1/115+18121933..18124518hypothetical protein
LOC_Os05g31330NANA5+18128706..18130556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31340NANA5+18134048..18139714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31350NANA5+18142163..18143574hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4488.1.S1_at--536--7091Chr05:18120033..18120057 (25 bp)
GTCAACACGCTGGACTCGGATGTGG
LOC_Os05g31310
OsAffx.4488.1.S1_at--841--7891Chr05:18120010..18120034 (25 bp)
GGTTCCGGACTCTATCGACATGGTG
LOC_Os05g31310
OsAffx.4488.1.S1_at--488--2111Chr05:18119993..18120017 (25 bp)
ACATGGTGCCGAACTACGTCGACAT
LOC_Os05g31310
OsAffx.4488.1.S1_at--665--9931Chr05:18119979..18120003 (25 bp)
TACGTCGACATGGTACCGGACTCCA
LOC_Os05g31310
OsAffx.4488.1.S1_at--51--5731Chr05:18119961..18119985 (25 bp)
GACTCCATCGAGGTGTTGCCAGACA
LOC_Os05g31310
OsAffx.4488.1.S1_at--751--1411Chr05:18119941..18119965 (25 bp)
AGACACCGTCGACATGGTGCTGGAC
LOC_Os05g31310
OsAffx.4488.1.S1_at--420--8691Chr05:18119905..18119929 (25 bp)
TGTGCAGTGTGTGCTCTCTGCGGCA
LOC_Os05g31310
OsAffx.4488.1.S1_at--384--9331Chr05:18119772..18119861 (25 bp)
TCGCCGCGAAGCTCGCAGAAAAGTT
LOC_Os05g31310
OsAffx.4488.1.S1_at--624--10793Chr02:19600467..19600606 (25 bp)
TTGATTGTGAGCTCTACATCCCTGA
NONE
OsAffx.4488.1.S1_at--58--5631Chr05:18119698..18119722 (25 bp)
GACACAATAATTCTACCCGATCACG
LOC_Os05g31310
OsAffx.4488.1.S1_at--1070--3131Chr05:18119690..18119714 (25 bp)
AATTCTACCCGATCACGTTCAAATG
LOC_Os05g31310
Target Sequence 
GTCAACACGCTGGACTCGGATGTGGTTCCGGACTCTATCGACATGGTGCCGAACTACGTCGACATGGTACCGGACTCCAT
CGAGGTGTTGCCAGACACCGTCGACATGGTGCTGGACTCCGTCGAGGTTGTGCAGTGTGTGCTCTCTGCGGCACGTTCCA
CGCTAGTGGCGTCTTCGGAGAAGCCTGCTACCAAGCTCGCCGCGAAGCTCGCAGAAAAGTTTGATTGTGAGCTCTACATC
CCTGATATGGAGATGCTTGAAATGAATGGTGACACAATAATTCTACCCGATCACGTTCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis