Browse Element(s) Details


Os.17183.1.A1_s_at

Description gb:AK103812.1
DB_XREF= gi:32989021
TID=Os.17183.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147B21, full insert sequence.
FL= gb:AK103812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3123011/11N-acetyltransferase ESCO2, putative, expressed
LOC_Os04g421207/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31170NANA5+18054681..18056126Eukaryotic aspartyl protease family protein
LOC_Os05g31180OsAffx.4486.1.S1_at10/115+18061807..18062836hypothetical protein
LOC_Os05g31190NANA5+18064936..18065560expressed protein
LOC_Os05g31200OsAffx.27099.1.S1_at10/115+18066640..18069272hypothetical protein
LOC_Os05g31210Os.45957.4.S1_x_at8/115+18069483..18073584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g31220Os.52749.1.S1_at6/115+18077106..18079883Cell division control protein 48 homolog B, putative
LOC_Os05g31230Os.17230.1.S1_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17230.1.S2_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17183.1.A1_s_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31254Os.49416.1.S1_at10/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.39411.1.A1_at4/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.45957.4.S1_x_at1/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31280Os.54789.1.S1_at10/115+18102682..18104050Gibberellin regulated protein, expressed
LOC_Os05g31290OsAffx.4487.1.S1_at11/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g31290OsAffx.27100.1.S1_at10/115+18109523..18112032Acyl carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17183.1.A1_s_at--1070--3271Chr05:18081131..18081155 (25 bp)
CAAACCATACATTAGCGTTCGGGAA
LOC_Os05g31230
Os.17183.1.A1_s_at--22--8212Chr05:18081091..18081115 (25 bp)
GGAAGTCCTGAAACGGCATGATCAT
LOC_Os05g31230
Os.17183.1.A1_s_at--293--4272Chr05:18081003..18081027 (25 bp)
CCTGCACATTGTGGATTTCGAGCAA
LOC_Os05g31230
Os.17183.1.A1_s_at--620--5192Chr05:18080982..18081006 (25 bp)
GCAATTTGGGTTGTACCGTCACGCA
LOC_Os05g31230
Os.17183.1.A1_s_at--979--8372Chr05:18080488..18080512 (25 bp)
GGCGAGACTTTGTGCATCTCACAGT
LOC_Os05g31230
Os.17183.1.A1_s_at--685--4712Chr05:18080429..18080453 (25 bp)
GCTGGCACGCAGCTATTGCAAGACC
LOC_Os05g31230
Os.17183.1.A1_s_at--750--5852Chr05:18080408..18080432 (25 bp)
GACCAGCGCATTCTTAGTCTACAAG
LOC_Os05g31230
Os.17183.1.A1_s_at--452--252Chr05:18080346..18080370 (25 bp)
ATATCTGAAACTTCTCTTCCCATTG
LOC_Os05g31230
Os.17183.1.A1_s_at--483--1452Chr05:18080247..18080271 (25 bp)
AGAAGCAGTGCGTTTTTGCAGGATC
LOC_Os05g31230
Os.17183.1.A1_s_at--894--5012Chr05:18080230..18080254 (25 bp)
GCAGGATCTCTATGTATTGACACTT
LOC_Os05g31230
Os.17183.1.A1_s_at--484--5631Chr05:18080212..18080236 (25 bp)
GACACTTTGGATTTCCTGATCAGCA
LOC_Os05g31230
Target Sequence 
CAAACCATACATTAGCGTTCGGGAAAATCAGTTTTAAGAGGGAAGTCCTGAAACGGCATGATCATTCAGACAAGAACAAA
GAAGAGTACCGAGATCCTGGTGCTATAATATGTGAAAAGGAAGATGTTCCTGCACATTGTGGATTTCGAGCAATTTGGGT
TGTACCGTCACGCAGAAGAAAGCGAATAGGGTCACAACTGATGGATGCTGCTAGAAAAAGCTTCCTTGAAGGCGAGACTT
TGTGCATCTCACAGTGCGCTTTCTCACCGCCTACTTCCTCCGGGAAGGCGCTGGCACGCAGCTATTGCAAGACCAGCGCA
TTCTTAGTCTACAAGGAGCAAGATGCATAGGAGATGCTGCAGAAGATGTTACATATCTGAAACTTCTCTTCCCATTGTAA
AAATTGTTTTGCTGGGGATATATGTGAAACATAAACAGGCATGTTCTGTTTTTAGTGTAAGTCTAAGCACCAGAAGCAGT
GCGTTTTTGCAGGATCTCTATGTATTGACACTTTGGATTTCCTGATCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17183.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis