Browse Element(s) Details


Os.52749.1.S1_at

Description gb:AK099085.1
DB_XREF= gi:32984294
TID=Os.52749.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004D02, full insert sequence.
FL= gb:AK099259.1 gb:AK099085.1 gb:AK069052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g421108/11Cell division control protein 48 homolog B, putative, expressed
LOC_Os05g312206/11Cell division control protein 48 homolog B, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g42110Os.52749.1.S1_at8/114+24712990..24716977Cell division control protein 48 homolog B, putative, expressed
LOC_Os04g42120Os.17183.1.A1_s_at7/114+24717117..24719232hypothetical protein
LOC_Os04g42130Os.17230.2.S1_at11/114+24721420..24724003folate/biopterin transporter family protein, expressed
LOC_Os04g42140Os.4805.1.S1_a_at11/114+24727065..24733133Eukaryotic initiation factor, putative, expressed
LOC_Os04g42150OsAffx.4054.1.S1_at11/114+24739562..24740223hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005516molecular_functioncalmodulin binding
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52749.1.S1_at--15--1372Chr05:18079690..18079714 (25 bp)
AGAGCGTACCGAGCTTTTCACGGGC
LOC_Os05g31220
Os.52749.1.S1_at--617--8391Chr05:18079712..18079808 (25 bp)
GGCGCAGATCTTGAAGGCCTGTCCA
LOC_Os05g31220
Os.52749.1.S1_at--34--8952Chr05:18079766..18079790 (25 bp)
TGACGATATTCACTTCCAGGCCGCG
LOC_Os05g31220
Os.52749.1.S1_at--50--10712Chr05:18079800..18079824 (25 bp)
TTGCGTCCATCACTTACACAATCAG
LOC_Os05g31220
Os.52749.1.S1_at--52--6092Chr05:18079833..18079857 (25 bp)
GAGTACTCAAATGCAGCCATCCATG
LOC_Os05g31220
Os.52749.1.S1_at--987--1672Chr05:18079847..18079871 (25 bp)
AGCCATCCATGGTCCATTGACGAGG
LOC_Os05g31220
Os.52749.1.S1_at--248--112Chr05:18079894..18079918 (25 bp)
ATTCTGGCGCACAAGCATCAGTGTC
NONE
Os.52749.1.S1_at--351--1112Chr05:18079913..18079937 (25 bp)
AGTGTCGCCCATTGTTGATTCTGAC
NONE
Os.52749.1.S1_at--470--5492Chr05:18079947..18079971 (25 bp)
GAACATTGTATCATCGGTCTGCTGT
NONE
Os.52749.1.S1_at--632--5651NONE
GACATGTTCCCATATGATTGCCGCG
NONE
Os.52749.1.S1_at--481--6591NONE
GATTGCCGCGGCTTGTACTGTTTCC
NONE
Target Sequence 
AGAGCGTACCGAGCTTTTCACGGGCGCAGATCTTGAAGGCCTGTCCAGGGAGGCGGGAATGGCTGCCTTGAGGGAAAGTC
TGAGGTCAGAGCGTTTTGTATGTGACGATATTCACTTCCAGGCCGCGCTAAGATCCTTGCGTCCATCACTTACACAATCA
GTGGTTGATGAGTACTCAAATGCAGCCATCCATGGTCCATTGACGAGGAGAAAACACTAAAAGATGTATTATTCTGGCGC
ACAAGCATCAGTGTCGCCCATTGTTGATTCTGACTAGTTATCAGAACATTGTATCATCGGTCTGCTGTATATATTGACCA
AAGTTGTGACATGTTCCCATATGATTGCCGCGGCTTGTACTGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis