Browse Element(s) Details


Os.4786.1.S2_at

Description gb:AK072162.1
DB_XREF= gi:32982185
TID=Os.4786.1
CNT=220
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4786 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for S-adenosylmethionine decarboxylase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full insert sequence.
FL= gb:AK062001.1 gb:AK072162.1 gb:AK100589.1 gb:AK098918.1 gb:AF067194.1 gb:AK067166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4209011/11S-adenosylmethionine decarboxylase proenzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g42110Os.52749.1.S1_at8/114+24712990..24716977Cell division control protein 48 homolog B, putative, expressed
LOC_Os04g42120Os.17183.1.A1_s_at7/114+24717117..24719232hypothetical protein
LOC_Os04g42130Os.17230.2.S1_at11/114+24721420..24724003folate/biopterin transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0004014molecular_functionadenosylmethionine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4786.1.S2_at--741--2831Chr04:24699142..24699166 (25 bp)
AAGTTTCCACTCTTGTTATCTCAAC
LOC_Os04g42090
Os.4786.1.S2_at--29--611Chr04:24699201..24699225 (25 bp)
ATGCCCATGGCACAGGTATATCTTA
LOC_Os04g42090
Os.4786.1.S2_at--202--1431Chr04:24699306..24699330 (25 bp)
AGAACTGCATTCTATAGCTTTCCCC
LOC_Os04g42090
Os.4786.1.S2_at--595--4251Chr04:24699329..24699353 (25 bp)
CCGTGTTCATGGTTATCTTCTGCAA
LOC_Os04g42090
Os.4786.1.S2_at--808--2831Chr04:24699368..24699392 (25 bp)
AAGTATATGCCGCATGCTTGGCTCT
LOC_Os04g42090
Os.4786.1.S2_at--369--8271Chr04:24699411..24699435 (25 bp)
GGCATGGACCATTGACTTCGATTTT
LOC_Os04g42090
Os.4786.1.S2_at--713--8031Chr04:24699499..24699523 (25 bp)
GGAGTGCTGCCTGATCTGATAATTG
LOC_Os04g42090
Os.4786.1.S2_at--603--1551Chr04:24699543..24699567 (25 bp)
AGCTTGATCTTGTCGCGCTTGGAAA
LOC_Os04g42090
Os.4786.1.S2_at--956--6291Chr04:24699568..24699592 (25 bp)
GATGATGCAGCGACCTGTTCGGTAC
LOC_Os04g42090
Os.4786.1.S2_at--334--6991Chr04:24699589..24699613 (25 bp)
GTACCCTATGCTTATCTTCTGACAT
LOC_Os04g42090
Os.4786.1.S2_at--466--6991Chr04:24699642..24699666 (25 bp)
GTACGCTTTGTACCCAATTATCCAT
LOC_Os04g42090
Target Sequence 
AAGTTTCCACTCTTGTTATCTCAACTCTGTAGAGCTCCCCCTGTTCCATGGGACTGCAAATGCCCATGGCACAGGTATAT
CTTAAGGTAGTACATTAATGAAAAGTCTGGGAGAATAGCATGTGCAAAATGCTTACTAGCTCTTATAAGTTAAAAATAGC
TGGAAGAACTGCATTCTATAGCTTTCCCCGTGTTCATGGTTATCTTCTGCAAGATATGGCTGGACGAAGTATATGCCGCA
TGCTTGGCTCTTGCCGCCCCATTCGCCTTGGCATGGACCATTGACTTCGATTTTTTTTTTGGACATGTTTATGTATTTGC
TTATTGTCCTCTACTTTACATGTAACAGTAATTTAAAGGAGTGCTGCCTGATCTGATAATTGCGTTTGGAATCCTTTAAT
GAGCTTGATCTTGTCGCGCTTGGAAAGATGATGCAGCGACCTGTTCGGTACCCTATGCTTATCTTCTGACATCCATATCT
GTATTATTGTTTATGAAGTTGTACGCTTTGTACCCAATTATCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4786.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis