Browse Element(s) Details


Os.46598.1.S1_a_at

Description gb:AK121024.1
DB_XREF= gi:37990647
TID=Os.46598.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.46598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049O11, full insert sequence.
FL= gb:AK121024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4202011/11CONSTANS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46598.1.S1_a_at--405--7291Chr04:24672093..24672117 (25 bp)
GTGCCGACCTTCTGATCGATCGCAA
LOC_Os04g42020
Os.46598.1.S1_a_at--665--8851Chr04:24672105..24672129 (25 bp)
TGATCGATCGCAACCAAAGCCGCTG
LOC_Os04g42020
Os.46598.1.S1_a_at--162--2371Chr04:24672120..24672144 (25 bp)
AAAGCCGCTGTGTACACTAGCCCTT
LOC_Os04g42020
Os.46598.1.S1_a_at--988--4191Chr04:24672148..24672172 (25 bp)
CCCCATTGGGCTGTAATTTTGTTGC
LOC_Os04g42020
Os.46598.1.S1_a_at--305--171Chr04:24672163..24672187 (25 bp)
ATTTTGTTGCATGCATTTCGCGCGC
LOC_Os04g42020
Os.46598.1.S1_a_at--532--10211Chr04:24672227..24672251 (25 bp)
TATTACACGGAAGTAATCCGGACTT
LOC_Os04g42020
Os.46598.1.S1_a_at--258--2851Chr04:24672237..24672261 (25 bp)
AAGTAATCCGGACTTCCAATCTCCT
LOC_Os04g42020
Os.46598.1.S1_a_at--524--6371Chr04:24672280..24672304 (25 bp)
GATCCTTCCATCCTTGCATGTATAT
LOC_Os04g42020
Os.46598.1.S1_a_at--595--8771Chr04:24672298..24672322 (25 bp)
TGTATATTATCATCGCGAACTGCTG
LOC_Os04g42020
Os.46598.1.S1_a_at--319--10411Chr04:24672304..24672328 (25 bp)
TTATCATCGCGAACTGCTGCTAATC
LOC_Os04g42020
Os.46598.1.S1_a_at--814--4591Chr04:24672312..24672336 (25 bp)
GCGAACTGCTGCTAATCTGCAAATT
LOC_Os04g42020
Target Sequence 
GTGCCGACCTTCTGATCGATCGCAACCAAAGCCGCTGTGTACACTAGCCCTTCTCCCCCATTGGGCTGTAATTTTGTTGC
ATGCATTTCGCGCGCGCGGGAAATGCTTTCNGTAGCATTAATCAATTGTATGATTATTACACGGAAGTAATCCGGACTTC
CAATCTCCTCTTCTCTCTNNNTACTCTGATCCTTCCATCCTTGCATGTATATTATCATCGCGAACTGCTGCTAATCTGCA
AATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46598.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis