Browse Element(s) Details


OsAffx.26424.1.S1_at

Description tigr:9632.m04004
TID=OsAffx.26424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Autophagocytosis associated protein, C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4199011/11Autophagocytosis associated protein, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26424.1.S1_at--429--731Chr04:24657667..24657691 (25 bp)
ATGTTGTGTACAGCTTTTCTTACAA
LOC_Os04g41990
OsAffx.26424.1.S1_at--1061--8651Chr04:24657663..24657687 (25 bp)
TGTGTACAGCTTTTCTTACAAGGTT
LOC_Os04g41990
OsAffx.26424.1.S1_at--1031--9511Chr04:24657482..24657506 (25 bp)
TCTCTCTCACTCAAATTATTAGGCG
LOC_Os04g41990
OsAffx.26424.1.S1_at--579--10331Chr04:24657467..24657491 (25 bp)
TTATTAGGCGAATCAAGGTGGACGT
LOC_Os04g41990
OsAffx.26424.1.S1_at--239--3211Chr04:24657454..24657478 (25 bp)
CAAGGTGGACGTTTATTACTCGAGA
LOC_Os04g41990
OsAffx.26424.1.S1_at--1110--131Chr04:24657337..24657464 (25 bp)
ATTACTCGAGAGGAGCATCCCCATT
LOC_Os04g41990
OsAffx.26424.1.S1_at--401--8191Chr04:24657247..24657271 (25 bp)
GGAATGCAAGACAAGGATCAACAAG
LOC_Os04g41990
OsAffx.26424.1.S1_at--500--5611Chr04:24657238..24657262 (25 bp)
GACAAGGATCAACAAGTGCGATACT
LOC_Os04g41990
OsAffx.26424.1.S1_at--660--1131Chr04:24657224..24657248 (25 bp)
AGTGCGATACTTACCAGCTTGGCTA
LOC_Os04g41990
OsAffx.26424.1.S1_at--530--6451Chr04:24657219..24657243 (25 bp)
GATACTTACCAGCTTGGCTAACTGT
LOC_Os04g41990
OsAffx.26424.1.S1_at--885--3391Chr04:24657210..24657234 (25 bp)
CAGCTTGGCTAACTGTGGTTGGCCA
LOC_Os04g41990
Target Sequence 
ATGTTGTGTACAGCTTTTCTTACAAGGTTCCAGTGCTATACTTTCAGGGTCATCAGTCTGGTGGCCAGCTGCTAACTCTA
GATGAGATTAAAGAGGACCTTCCTTCTCTCTCACTCAAATTATTAGGCGAATCAAGGTGGACGTTTATTACTCGAGAGGA
GCATCCCCATTTTAGTAGGCCATGGTTCACTTTGCATCCCTGTGGAACCAGTGACTGTATGAAGTTACTTCTTGAAGGAA
TGCAAGACAAGGATCAACAAGTGCGATACTTACCAGCTTGGCTAACTGTGGTTGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis