Browse Element(s) Details


Os.15917.1.S1_at

Description gb:AK109382.2
DB_XREF= gi:42821697
TID=Os.15917.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.15917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-F02, full insert sequence.
FL= gb:AK069136.1 gb:AK109382.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4196011/11NADP-dependent oxidoreductase P1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41920Os.6933.1.S1_at11/114+24622208..24624571expressed protein
LOC_Os04g41930OsAffx.4053.1.S1_at11/114+24625088..24625944expressed protein
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15917.1.S1_at--575--8191Chr04:24639546..24639570 (25 bp)
GGAAGGGATCGACATCTACTTCGAA
LOC_Os04g41960
Os.15917.1.S1_at--514--9531Chr04:24639532..24639556 (25 bp)
TCTACTTCGAAAACGTGGGCGGCGC
LOC_Os04g41960
Os.15917.1.S1_at--684--2671Chr04:24639386..24639410 (25 bp)
AAGCGGCTCCGGATCGAAGGGTTCA
LOC_Os04g41960
Os.15917.1.S1_at--101--5331Chr04:24639371..24639395 (25 bp)
GAAGGGTTCATCGTGTCCGACCACT
LOC_Os04g41960
Os.15917.1.S1_at--575--5831Chr04:24639353..24639377 (25 bp)
GACCACTACGCCAGGTACAGGGAGT
LOC_Os04g41960
Os.15917.1.S1_at--844--3251Chr04:24639216..24639240 (25 bp)
CAACGTCGGCAAGCAGGTGGTCGTC
LOC_Os04g41960
Os.15917.1.S1_at--312--9411Chr04:24639193..24639217 (25 bp)
TCGTCGCCAGGGAGTAACCGCGAGA
LOC_Os04g41960
Os.15917.1.S1_at--941--6951Chr04:24639153..24639177 (25 bp)
GTAGCGGTATGGTTACACTTCACTA
LOC_Os04g41960
Os.15917.1.S1_at--416--6771Chr04:24639142..24639166 (25 bp)
GTTACACTTCACTAGTGCTGTGCAT
LOC_Os04g41960
Os.15917.1.S1_at--130--3611Chr04:24639120..24639144 (25 bp)
CATTGTCCTGATGGCTGATGCTGTG
LOC_Os04g41960
Os.15917.1.S1_at--1129--1531Chr04:24639082..24639106 (25 bp)
AGCTTAGCTGAATGCGTTGGATTTT
LOC_Os04g41960
Target Sequence 
GGAAGGGATCGACATCTACTTCGAAAACGTGGGCGGCGCGATGCTGGACGCCGTGCTGCTCAACATGCGGGTGCGCGGCC
GCGTCGCGGCCTGNGGGNATGATCTCGCAGTACAACCTGGAGCACCCCGACCCCGTCCACAACCTGACGGCCATCGTCAC
GAAGCGGCTCCGGATCGAAGGGTTCATCGTGTCCGACCACTACGCCAGGTACAGGGAGTACGAGGAGAAGGCCGCGCGGT
ATGTGAAGGAGGGGAAGATCGCGTACGTGGAGGACGTCGCCGAAGGGCTGGAGAACGCGCCGGCCGCGCTCATCGGGCTC
TTCTCCGGCCGCAACGTCGGCAAGCAGGTGGTCGTCGTCGCCAGGGAGTAACCGCGAGATGTGTAGTTAAACGTGTAGCG
GTATGGTTACACTTCACTAGTGCTGTGCATTGTCCTGATGGCTGATGCTGTGTTTAGATGTGTCAAGCTTAGCTGAATGC
GTTGGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis