Browse Element(s) Details


Os.53032.1.S1_at

Description gb:AK070530.1
DB_XREF= gi:32980554
TID=Os.53032.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061H21, full insert sequence.
FL= gb:AK103493.1 gb:AK070530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4200011/116,7-dimethyl-8-ribityllumazine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0000906molecular_function6,7-dimethyl-8-ribityllumazine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53032.1.S1_at--803--3131Chr04:24660852..24660873 (22 bp)
AATTTTGTGCATTGGCGCTGTGATT
LOC_Os04g42000
Os.53032.1.S1_at--12--2611Chr04:24660195..24660219 (25 bp)
AACCCACTACGATGCTGTTGCAAAC
LOC_Os04g42000
Os.53032.1.S1_at--576--2391Chr04:24660174..24660198 (25 bp)
AAACTCTGCTGCTTCAGGTGTACTG
LOC_Os04g42000
Os.53032.1.S1_at--190--1051Chr04:24660159..24660183 (25 bp)
AGGTGTACTGTCTGCTGGATTGTCT
LOC_Os04g42000
Os.53032.1.S1_at--271--6611Chr04:24660013..24660166 (25 bp)
GATTGTCTGCTGAGATCCCATGCAT
LOC_Os04g42000
Os.53032.1.S1_at--45--911Chr04:24659507..24659531 (25 bp)
AGGCTCTAAATCGTGCTGGTGGTAA
LOC_Os04g42000
Os.53032.1.S1_at--614--1671Chr04:24659387..24659485 (25 bp)
AGCCGCTCTAACTGCAATCGAGATG
LOC_Os04g42000
Os.53032.1.S1_at--703--4851Chr04:24659324..24659348 (25 bp)
GCTACTGATATCATCGGGACGGCAA
LOC_Os04g42000
Os.53032.1.S1_at--1052--8871Chr04:24659257..24659281 (25 bp)
TGAGGCCATTATTATCCATTGTCCC
LOC_Os04g42000
Os.53032.1.S1_at--877--10331Chr04:24659202..24659226 (25 bp)
TTTACCGCTGTTCTTTTTGTCGAGT
LOC_Os04g42000
Os.53032.1.S1_at--943--5351Chr04:24659163..24659187 (25 bp)
GAAGAGGTATCACCGTCCAGCTAAG
LOC_Os04g42000
Target Sequence 
AATTTTGTGCATTGGCGCTGTGATTAGAGGTGACACAACCCACTACGATGCTGTTGCAAACTCTGCTGCTTCAGGTGTAC
TGTCTGCTGGATTGTCTGCTGAGATCCCATGCATATTTGGTGTTCTGACATGTGATGACATGGACCAGGCTCTAAATCGT
GCTGGTGGTAAGGCTGGAAACAAGGGAGCTGAAGCCGCTCTAACTGCAATCGAGATGGCCTCGCTGTTCCAGCATCACCT
GGCCTGACCGCCGGGGCTACTGATATCATCGGGACGGCAAAGTTTTGGCTGCTAGAGATTTTCGCCGTTTGCTATAGCAT
CTTGAGGCCATTATTATCCATTGTCCCCAACTGGTTGATCGGGATGATGGTTGTGTTTTTACCGCTGTTCTTTTTGTCGA
GTTTTTTTGCAAGACTGAAGAGGTATCACCGTCCAGCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis