Browse Element(s) Details


Os.38386.1.A1_at

Description gb:AK100471.1
DB_XREF= gi:32985680
TID=Os.38386.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093F18, full insert sequence.
FL= gb:AK100471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4203011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38386.1.A1_at--746--10851Chr04:24676825..24676849 (25 bp)
TTGGTCAAGACAAGCATCGAAGCGT
LOC_Os04g42030
Os.38386.1.A1_at--635--6231Chr04:24676890..24676914 (25 bp)
GATGGAATTGAGAATGGCCCGTGCA
LOC_Os04g42030
Os.38386.1.A1_at--261--8471Chr04:24676904..24676928 (25 bp)
TGGCCCGTGCAAACACAATGGTTAT
LOC_Os04g42030
Os.38386.1.A1_at--610--2771Chr04:24677032..24677056 (25 bp)
AAGAGCAAGGCTCCTGGGCACTTTC
LOC_Os04g42030
Os.38386.1.A1_at--397--8651Chr04:24677046..24677070 (25 bp)
TGGGCACTTTCTGAGGGCCGCTGTC
LOC_Os04g42030
Os.38386.1.A1_at--1011--8651Chr04:24677067..24677091 (25 bp)
TGTCCGACCATTCACCTACAGGAAT
LOC_Os04g42030
Os.38386.1.A1_at--291--5531Chr04:24677206..24677230 (25 bp)
GAAACAGGTACCTGCAATTCCTCAA
LOC_Os04g42030
Os.38386.1.A1_at--949--7111Chr04:24677283..24677307 (25 bp)
GTCAGTCATGATGTAATCCTTCCTT
LOC_Os04g42030
Os.38386.1.A1_at--293--2631Chr04:24677297..24677321 (25 bp)
AATCCTTCCTTTGTGGAATTTTCAG
LOC_Os04g42030
Os.38386.1.A1_at--865--5131Chr04:24677341..24677365 (25 bp)
GCAACTACGGTATCTCTGAATTCTG
LOC_Os04g42030
Os.38386.1.A1_at--147--7091Chr04:24677381..24677405 (25 bp)
GTCAAGTTGGAGTTTGGCTCAATTC
LOC_Os04g42030
Target Sequence 
TTGGTCAAGACAAGCATCGAAGCGTCAAATGAGTATAACAGGCGACGGATGCAACAGGAGAAAGAGATGGAATTGAGAAT
GGCCCGTGCAAACACAATGGTTATGAAGCAGGAGCAGACTGAGGATGAGGATGAGCAGCAGGAGCAGATTGAGGATGAGG
ATGAGCAGCAGGAGAGTCCAAGGGGCAGAAGCGCAAAAGATAAGCGCAAGAGCAAGGCTCCTGGGCACTTTCTGAGGGCC
GCTGTCCGACCATTCACCTACAGGAATCTTGTGAAAGAAATTGTTNTTATGAGGCATTTCATTGNTGATGGAGAGATAGA
TTAGCTTTAAAATGNTAAGATGATATATTTTCAGAGCCNCTANATAANTGTAGAGATGGCAGAAACAGGTACCTGCAATT
CCTCAANTGTGTTCAATTAGTGGATNTTACCAATTTTGATNTGTGCCCTTAGGGAANAGTCAGTCATGATGTAATCCTTC
CTTTGTGGAATTTTCAGTAAATTTTNGAGAATAGAAGCAACTACGGTATCTCTGAATTCTGTTATACTGTTTTATAGTCA
AGTTGGAGTTTGGCTCAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38386.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis