Browse Element(s) Details


OsAffx.14236.1.S1_at

Description tigr:9632.m04009
TID=OsAffx.14236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4204011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14236.1.S1_at--554--4091Chr04:24680658..24680682 (25 bp)
CGACTTCAACTACGCGAGGTCCAAG
LOC_Os04g42040
OsAffx.14236.1.S1_at--155--9331Chr04:24680714..24681033 (25 bp)
TCGCCATGCCCGACGGGAAGTGGAA
LOC_Os04g42040
OsAffx.14236.1.S1_at--820--1091Chr04:24681027..24681051 (25 bp)
AGTGGAAGCTGCACACGGTGTCCGC
LOC_Os04g42040
OsAffx.14236.1.S1_at--926--5351Chr04:24681091..24681115 (25 bp)
GAAGATGAACCTGGTCATGGCGTTC
LOC_Os04g42040
OsAffx.14236.1.S1_at--442--6911Chr04:24681132..24681156 (25 bp)
GTAAGAAACCGAACGCGCAAGTCGA
LOC_Os04g42040
OsAffx.14236.1.S1_at--274--5171Chr04:24681148..24681172 (25 bp)
GCAAGTCGACCGTGCGACTGCCATT
LOC_Os04g42040
OsAffx.14236.1.S1_at--15--6751Chr04:24681176..24681200 (25 bp)
GTTCATCTTCTGACCTTGCGTGAAA
LOC_Os04g42040
OsAffx.14236.1.S1_at--919--5931Chr04:24681207..24681231 (25 bp)
GAGCAGGTGTGATCCACGACGTGCA
LOC_Os04g42040
OsAffx.14236.1.S1_at--26--4611Chr04:24681269..24681293 (25 bp)
GCGACGTACCCGATCGAGGTCACGA
LOC_Os04g42040
OsAffx.14236.1.S1_at--795--511Chr04:24681281..24681305 (25 bp)
ATCGAGGTCACGACGAGCAAGGGCA
LOC_Os04g42040
OsAffx.14236.1.S1_at--1011--5771Chr04:24681323..24681347 (25 bp)
GACGACTACGGCGTGTACAAGAGGT
LOC_Os04g42040
Target Sequence 
CGACTTCAACTACGCGAGGTCCAAGGCGGCGCTCGCCAAGGGGGACGAGATGTTCGTCGCCATGCCCGACGGGAAGTGGA
AGCTGCACACGGTGTCCGCGGCGACGAGCAAGGGCGGCAAGGTGGTCATGCGGATCAAGAAGATGAACCTGGTCATGGCG
TTCTCCAACGCCAAAGAGAGTAAGAAACCGAACGCGCAAGTCGACCGTGCGACTGCCATTCCCGTTCATCTTCTGACCTT
GCGTGAAAACGATCGAGCAGGTGTGATCCACGACGTGCAGCCGTGCGCGCCGGAGAAGCCGAGCCGCGACGAGGACGCGA
CGTACCCGATCGAGGTCACGACGAGCAAGGGCAAGGTGGAGCTCCGCGCCGACGACTACGGCGTGTACAAGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis