Browse Element(s) Details


OsAffx.26425.1.S1_at

Description tigr:9632.m04010
TID=OsAffx.26425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4205011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26425.1.S1_at--284--8491Chr04:24686122..24686146 (25 bp)
TGGCTCCCAGGCTGGTTCGTCTTGG
LOC_Os04g42050
OsAffx.26425.1.S1_at--220--9331Chr04:24686126..24686150 (25 bp)
TCCCAGGCTGGTTCGTCTTGGCTGA
LOC_Os04g42050
OsAffx.26425.1.S1_at--1075--4171Chr04:24686127..24686151 (25 bp)
CCCAGGCTGGTTCGTCTTGGCTGAT
LOC_Os04g42050
OsAffx.26425.1.S1_at--131--4351Chr04:24686128..24686152 (25 bp)
CCAGGCTGGTTCGTCTTGGCTGATG
LOC_Os04g42050
OsAffx.26425.1.S1_at--641--3491Chr04:24686129..24686153 (25 bp)
CAGGCTGGTTCGTCTTGGCTGATGA
LOC_Os04g42050
OsAffx.26425.1.S1_at--1032--4711Chr04:24686132..24686156 (25 bp)
GCTGGTTCGTCTTGGCTGATGATGA
LOC_Os04g42050
OsAffx.26425.1.S1_at--428--3911Chr04:24686133..24686157 (25 bp)
CTGGTTCGTCTTGGCTGATGATGAT
LOC_Os04g42050
OsAffx.26425.1.S1_at--123--4291Chr04:24686172..24686196 (25 bp)
CCTCCTCCATGGTCGGGCTGCTTGT
LOC_Os04g42050
OsAffx.26425.1.S1_at--892--4331Chr04:24686178..24686202 (25 bp)
CCATGGTCGGGCTGCTTGTGAGCTC
LOC_Os04g42050
OsAffx.26425.1.S1_at--1070--811Chr04:24686180..24686204 (25 bp)
ATGGTCGGGCTGCTTGTGAGCTCGC
LOC_Os04g42050
OsAffx.26425.1.S1_at--472--3991Chr04:24686185..24686209 (25 bp)
CGGGCTGCTTGTGAGCTCGCTGGAG
LOC_Os04g42050
Target Sequence 
TGGCTCCCAGGCTGGTTCGTCTTGGCTGATGATGATGAGGAGGATGATGTCCTCCTCCATGGTCGGGCTGCTTGTGAGCT
CGCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis