Browse Element(s) Details


Os.4786.1.S1_at

Description gb:AF067194.1
DB_XREF= gi:3929544
TID=Os.4786.1
CNT=220
FEA=FLmRNA
TIER=FL+Stack
STK=61
UG=Os.4786 (NCBI UniGene Cluster)
DEF=Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds.
PROD=S-adenosylmethionine decarboxylase
FL= gb:AK062001.1 gb:AK072162.1 gb:AK100589.1 gb:AK098918.1 gb:AF067194.1 gb:AK067166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4209011/11S-adenosylmethionine decarboxylase proenzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g42110Os.52749.1.S1_at8/114+24712990..24716977Cell division control protein 48 homolog B, putative, expressed
LOC_Os04g42120Os.17183.1.A1_s_at7/114+24717117..24719232hypothetical protein
LOC_Os04g42130Os.17230.2.S1_at11/114+24721420..24724003folate/biopterin transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0004014molecular_functionadenosylmethionine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4786.1.S1_at--16--3511Chr04:24698538..24698562 (25 bp)
CATGGTAGAGCAGGAGCTGCCCTGT
LOC_Os04g42090
Os.4786.1.S1_at--1033--2751Chr04:24698600..24698624 (25 bp)
AAGACGTACCTGTTGCTGTTGGGTC
LOC_Os04g42090
Os.4786.1.S1_at--216--6631Chr04:24698617..24698641 (25 bp)
GTTGGGTCGCCCAAATCTGTTCTGC
LOC_Os04g42090
Os.4786.1.S1_at--513--3851Chr04:24698638..24698662 (25 bp)
CTGCACTGCTTCGAGGCTGAGAATA
LOC_Os04g42090
Os.4786.1.S1_at--420--8891Chr04:24698655..24698679 (25 bp)
TGAGAATATGGTGAACCCTGCTCCT
LOC_Os04g42090
Os.4786.1.S1_at--357--7351Chr04:24698665..24698689 (25 bp)
GTGAACCCTGCTCCTGTTAAGGAAG
LOC_Os04g42090
Os.4786.1.S1_at--439--9351Chr04:24698873..24698897 (25 bp)
TCGCTTGTAAGCATGTGTTCTGATC
LOC_Os04g42090
Os.4786.1.S1_at--941--7411Chr04:24698887..24698911 (25 bp)
GTGTTCTGATCTTGGGACGTATGCT
LOC_Os04g42090
Os.4786.1.S1_at--774--7631Chr04:24698900..24698924 (25 bp)
GGGACGTATGCTTGGTCTAAATAAT
LOC_Os04g42090
Os.4786.1.S1_at--734--2351Chr04:24698937..24698961 (25 bp)
AAAGCTCTAGGTGGTCAGCTGCGTC
LOC_Os04g42090
Os.4786.1.S1_at--866--9131Chr04:24698956..24698980 (25 bp)
TGCGTCTGCCACAATGAGCATGCGT
LOC_Os04g42090
Target Sequence 
CATGGTAGAGCAGGAGCTGCCCTGTGGNGGCCTCCTCATCTACCAGAGCTTCGACGCTACNGAAGACGTACCTGTTGCTG
TTGGGTCGCCCAAATCTGTTCTGCACTGCTTCGAGGCTGAGAATATGGTGAACCCTGCTCCTGTTAAGGAAGGTAAACTG
GGCAATCTTCTCCCCTGGGGAGAGGATGCGTTGGAGGAGAATGATGGAGTGTTTGATGAGTAAGANGGGACTTCTGGTGA
CGATTCGCTGCTTTGTTTTCNTTCCGTGGCATTTTTATCTGTTGAGGTTGTCGTTTGGTTATTCTGTGAAGCAGCCAGCC
AGGCTATTAGTANTTTCGCTTGTAAGCATGTGTTCTGATCTTGGGACGTATGCTTGGTCTAAATAATAATGGTGAACTAA
AAGCTCTAGGTGGTCAGCTGCGTCTGCCACAATGAGCATGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis