Browse Element(s) Details


Os.5796.1.S1_at

Description gb:AK121011.1
DB_XREF= gi:37990634
TID=Os.5796.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047C08, full insert sequence.
FL= gb:AK059661.1 gb:AK121011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g421008/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g42110Os.52749.1.S1_at8/114+24712990..24716977Cell division control protein 48 homolog B, putative, expressed
LOC_Os04g42120Os.17183.1.A1_s_at7/114+24717117..24719232hypothetical protein
LOC_Os04g42130Os.17230.2.S1_at11/114+24721420..24724003folate/biopterin transporter family protein, expressed
LOC_Os04g42140Os.4805.1.S1_a_at11/114+24727065..24733133Eukaryotic initiation factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5796.1.S1_at--815--911Chr04:24701641..24701665 (25 bp)
AGGCTCACCAGCCTCGGCGTCAGGA
LOC_Os04g42100
Os.5796.1.S1_at--862--7311Chr04:24701588..24701612 (25 bp)
GTGCTCCCGCGTCAACGGCTGATGA
LOC_Os04g42100
Os.5796.1.S1_at--500--2571Chr04:24701575..24701599 (25 bp)
AACGGCTGATGATGCGTGCACGCAC
LOC_Os04g42100
Os.5796.1.S1_at--53--7351Chr04:24701560..24701584 (25 bp)
GTGCACGCACGATCGATACATACAT
LOC_Os04g42100
Os.5796.1.S1_at--788--5311Chr04:24701530..24701554 (25 bp)
GAAGGGATCGACACAATGTATGTTG
LOC_Os04g42100
Os.5796.1.S1_at--859--6291Chr04:24701468..24701492 (25 bp)
GATGATCTGTTTGTAGTAGCAGCTT
LOC_Os04g42100
Os.5796.1.S1_at--753--9231Chr04:24701430..24701454 (25 bp)
TCCATGCTCTGGTCTGGATGGTCAT
LOC_Os04g42100
Os.5796.1.S1_at--1104--7171Chr04:24701419..24701443 (25 bp)
GTCTGGATGGTCATGATTTAGCGAA
LOC_Os04g42100
Os.5796.1.S1_at--625--6891NONE
GTATAATGTAGATGGCGAGATGCGT
NONE
Os.5796.1.S1_at--1041--4611NONE
GCGAGATGCGTTTTATCTGTAACCA
NONE
Os.5796.1.S1_at--118--9811NONE
TAACCAAGTTAAGCGCAGTGATCAC
NONE
Target Sequence 
AGGCTCACCAGCCTCGGCGTCAGGACCGGCGCCGACGGCGAGGTCCGCCGGACGTGCTCCCGCGTCAACGGCTGATGATG
CGTGCACGCACGATCGATACATACATGCATAGAAGGGATCGACACAATGTATGTTGAGAATGATCGATATTCGATTTGTT
CGTTGTTGTTGATGATGATCTGTTTGTAGTAGCAGCTTGGTTNTTTTTTTNCTCCATGCTCTGGTCTGGATGGTCATGAT
TTAGCGAAAGGAGAGTGANAAATTAAGTGATCTAAATTCTAAATGATTTAGCGAAAGGAGTATAATGTAGATGGCGAGAT
GCGTTTTATCTGTAACCAAGTTAAGCGCAGTGATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis