Browse Element(s) Details


Os.4805.1.S1_a_at

Description gb:AY224450.1
DB_XREF= gi:29367392
TID=Os.4805.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4805 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 23225 eukaryotic initiation factor-like protein mRNA, complete cds.
PROD=eukaryotic initiation factor-like protein
FL= gb:AY224450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4214011/11Eukaryotic initiation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g42110Os.52749.1.S1_at8/114+24712990..24716977Cell division control protein 48 homolog B, putative, expressed
LOC_Os04g42120Os.17183.1.A1_s_at7/114+24717117..24719232hypothetical protein
LOC_Os04g42130Os.17230.2.S1_at11/114+24721420..24724003folate/biopterin transporter family protein, expressed
LOC_Os04g42140Os.4805.1.S1_a_at11/114+24727065..24733133Eukaryotic initiation factor, putative, expressed
LOC_Os04g42150OsAffx.4054.1.S1_at11/114+24739562..24740223hypothetical protein
LOC_Os04g42160OsAffx.26426.1.S1_at11/114+24742827..24743033hypothetical protein
LOC_Os04g42170OsAffx.26427.1.S1_at11/114+24744139..24744477hypothetical protein
LOC_Os04g42180NANA4+24745426..24748303transposon protein, putative, Mariner sub-class
LOC_Os04g42189NANA4+24750936..24751178hypothetical protein
LOC_Os04g42200NANA4+24752469..24753230hypothetical protein
LOC_Os04g42210Os.20512.1.S1_at11/114+24754073..24754949expressed protein
LOC_Os04g42220OsAffx.4055.1.S1_at11/114+24756877..24757966expressed protein
LOC_Os04g42230OsAffx.26428.1.S1_at11/114+24758112..24758762hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006413biological_processtranslational initiation
GO:0009615biological_processresponse to virus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4805.1.S1_a_at--155--3391Chr04:24728095..24728119 (25 bp)
CAGCTGTTGTGCCTGTCACAGACAA
LOC_Os04g42140
Os.4805.1.S1_a_at--576--7091Chr04:24728081..24728105 (25 bp)
GTCACAGACAAAGCAGCCGGTTCTT
LOC_Os04g42140
Os.4805.1.S1_a_at--331--10651Chr04:24728058..24728082 (25 bp)
TTCCCATGAGATGCCAGCTGCAGTT
LOC_Os04g42140
Os.4805.1.S1_a_at--980--2751Chr04:24728027..24728051 (25 bp)
AAGACGGTATCCCTTCTTGAAGAGT
LOC_Os04g42140
Os.4805.1.S1_a_at--463--8071Chr04:24727959..24727983 (25 bp)
GGAGCTTCAGTGTCCTGAGTACTAC
LOC_Os04g42140
Os.4805.1.S1_a_at--240--6471Chr04:24727898..24727922 (25 bp)
GATAAGGGTCCCAACTTCATTGATC
LOC_Os04g42140
Os.4805.1.S1_a_at--150--7991Chr04:24727808..24727832 (25 bp)
GGATGCTTACTGTATGCAGCCCTGC
LOC_Os04g42140
Os.4805.1.S1_a_at--475--10231Chr04:24727776..24727800 (25 bp)
TATTGGTATTGACCTTCCTCTAGCT
LOC_Os04g42140
Os.4805.1.S1_a_at--240--4791Chr04:24727754..24727778 (25 bp)
GCTCCAGCCTTGTTTGGTGAAGTTG
LOC_Os04g42140
Os.4805.1.S1_a_at--247--5911Chr04:24727584..24727608 (25 bp)
GAGCTCGCATGCTGTGGTAATCGAC
LOC_Os04g42140
Os.4805.1.S1_a_at--635--7831Chr04:24727569..24727593 (25 bp)
GGTAATCGACGCCTGCAACAAACTT
LOC_Os04g42140
Target Sequence 
CAGCTGTTGTGCCTGTCACAGACAAAGCAGCCGGTTCTTCCCATGAGATGCCAGCTGCAGTTCAGAAGAAGACGGTATCC
CTTCTTGAAGAGTATTTTGGCATACGTATTCTGGATGAAGCACAACAATGTATCGAGGAGCTTCAGTGTCCTGAGTACTA
CTCTGAGATTGTGAAAGAAGCTATCAATCTTGCTCTGGATAAGGGTCCCAACTTCATTGATCCCCTTGTTAGGCTGCTGG
AGCATCTGCACACCAAGAAAATTTTCAAGACTGAGGACCTGAAAACTGGATGCTTACTGTATGCAGCCCTGCTGGAAGAT
ATTGGTATTGACCTTCCTCTAGCTCCAGCCTTGTTTGGTGAAGTTGTTGCACGACTGAGTTTGTCGTGTAGCTTGAGCTT
TGAAGTTGTTGAGGAGATTCTAAAAGCAGTGGAGGATACATACTTCCGCAAAGGAATTTTTGATGCTGTCATGAAAACCA
TGGGTGGAAACTCTTCAGGTCAGGCTATCTTGAGCTCGCATGCTGTGGTAATCGACGCCTGCAACAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4805.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis