Browse Element(s) Details


OsAffx.4054.1.S1_at

Description tigr:9632.m04021
TID=OsAffx.4054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4215011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42110Os.52749.1.S1_at8/114+24712990..24716977Cell division control protein 48 homolog B, putative, expressed
LOC_Os04g42120Os.17183.1.A1_s_at7/114+24717117..24719232hypothetical protein
LOC_Os04g42130Os.17230.2.S1_at11/114+24721420..24724003folate/biopterin transporter family protein, expressed
LOC_Os04g42140Os.4805.1.S1_a_at11/114+24727065..24733133Eukaryotic initiation factor, putative, expressed
LOC_Os04g42150OsAffx.4054.1.S1_at11/114+24739562..24740223hypothetical protein
LOC_Os04g42160OsAffx.26426.1.S1_at11/114+24742827..24743033hypothetical protein
LOC_Os04g42170OsAffx.26427.1.S1_at11/114+24744139..24744477hypothetical protein
LOC_Os04g42180NANA4+24745426..24748303transposon protein, putative, Mariner sub-class
LOC_Os04g42189NANA4+24750936..24751178hypothetical protein
LOC_Os04g42200NANA4+24752469..24753230hypothetical protein
LOC_Os04g42210Os.20512.1.S1_at11/114+24754073..24754949expressed protein
LOC_Os04g42220OsAffx.4055.1.S1_at11/114+24756877..24757966expressed protein
LOC_Os04g42230OsAffx.26428.1.S1_at11/114+24758112..24758762hypothetical protein
LOC_Os04g42240Os.55315.1.S1_at11/114+24762956..24763941expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4054.1.S1_at--315--1191Chr04:24739748..24739772 (25 bp)
AGTATGGCACGAAGGCATTGGCTGA
LOC_Os04g42150
OsAffx.4054.1.S1_at--667--10471Chr04:24739784..24739808 (25 bp)
TTAAATCCACGTCACTGTGGCGCGA
LOC_Os04g42150
OsAffx.4054.1.S1_at--1063--8351Chr04:24739802..24739826 (25 bp)
GGCGCGAGATTGAGCTTCGTACCGA
LOC_Os04g42150
OsAffx.4054.1.S1_at--935--10351Chr04:24739849..24739873 (25 bp)
TTTTACCATGGGTGCGGCCTTCGCA
LOC_Os04g42150
OsAffx.4054.1.S1_at--853--3311Chr04:24739872..24739896 (25 bp)
CACATGGTCAGCGTACAGGCAGAAC
LOC_Os04g42150
OsAffx.4054.1.S1_at--795--8251Chr04:24739889..24739913 (25 bp)
GGCAGAACATCCCTATTTTTAATAA
LOC_Os04g42150
OsAffx.4054.1.S1_at--140--7211Chr04:24739955..24739979 (25 bp)
GTCGTCGTGTGGAAATTGGCCTATT
LOC_Os04g42150
OsAffx.4054.1.S1_at--294--10871Chr04:24739970..24739994 (25 bp)
TTGGCCTATTTTATCTGCAATCAAA
LOC_Os04g42150
OsAffx.4054.1.S1_at--989--10351Chr04:24740004..24740028 (25 bp)
TTTTCAGTTTACAGTCCGGAGTCCT
LOC_Os04g42150
OsAffx.4054.1.S1_at--486--7251Chr04:24740017..24740041 (25 bp)
GTCCGGAGTCCTTTGGACAACAACA
LOC_Os04g42150
OsAffx.4054.1.S1_at--730--5311Chr04:24740117..24740141 (25 bp)
GAAGCCTTTCCCCTATAATTATGGG
LOC_Os04g42150
Target Sequence 
AGTATGGCACGAAGGCATTGGCTGAGCAAGTTATGGTTAAATCCACGTCACTGTGGCGCGAGATTGAGCTTCGTACCGAG
ACAAGGATGATTACAGCATTTTTTTACCATGGGTGCGGCCTTCGCACATGGTCAGCGTACAGGCAGAACATCCCTATTTT
TAATAAATTGCATGCCGCATTAAACAATATACTCAGAAGGTACAAGAGTCGTCGTGTGGAAATTGGCCTATTTTATCTGC
AATCAAATATGAAATGTTTTCAGTTTACAGTCCGGAGTCCTTTGGACAACAACAACGAGTTTCTGAAAAAGTTACGGAAA
ATTAAAGCACACGAATGCAACATGAGAGAAGATAATGCGGAGAAAACTGGAAGCCTTTCCCCTATAATTATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis