Browse Element(s) Details


OsAffx.4055.1.S1_at

Description tigr:9632.m04028
TID=OsAffx.4055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4222011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42140Os.4805.1.S1_a_at11/114+24727065..24733133Eukaryotic initiation factor, putative, expressed
LOC_Os04g42150OsAffx.4054.1.S1_at11/114+24739562..24740223hypothetical protein
LOC_Os04g42160OsAffx.26426.1.S1_at11/114+24742827..24743033hypothetical protein
LOC_Os04g42170OsAffx.26427.1.S1_at11/114+24744139..24744477hypothetical protein
LOC_Os04g42180NANA4+24745426..24748303transposon protein, putative, Mariner sub-class
LOC_Os04g42189NANA4+24750936..24751178hypothetical protein
LOC_Os04g42200NANA4+24752469..24753230hypothetical protein
LOC_Os04g42210Os.20512.1.S1_at11/114+24754073..24754949expressed protein
LOC_Os04g42220OsAffx.4055.1.S1_at11/114+24756877..24757966expressed protein
LOC_Os04g42230OsAffx.26428.1.S1_at11/114+24758112..24758762hypothetical protein
LOC_Os04g42240Os.55315.1.S1_at11/114+24762956..24763941expressed protein
LOC_Os04g42250Os.12225.1.S1_at11/114+24774815..24780439Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4055.1.S1_at--679--5391Chr04:24757003..24757024 (22 bp)
GAAGCAGGCCGCTTCCTATCAGAGC
LOC_Os04g42220
OsAffx.4055.1.S1_at--1162--10151Chr04:24757356..24757377 (22 bp)
TATCAGAGCCGTGCCCGGTGGAGTT
LOC_Os04g42220
OsAffx.4055.1.S1_at--809--2851Chr04:24757412..24757436 (25 bp)
AAGTGCAACGACAAGCAGACGATGA
LOC_Os04g42220
OsAffx.4055.1.S1_at--313--991Chr04:24757437..24757461 (25 bp)
AGGAGTGCTGCGAGCTGTTCAAGAA
LOC_Os04g42220
OsAffx.4055.1.S1_at--255--8791Chr04:24757452..24757476 (25 bp)
TGTTCAAGAAGATCGCGTGCCCCTA
LOC_Os04g42220
OsAffx.4055.1.S1_at--1005--2731Chr04:24757457..24757481 (25 bp)
AAGAAGATCGCGTGCCCCTACAACC
LOC_Os04g42220
OsAffx.4055.1.S1_at--432--391Chr04:24757496..24757520 (25 bp)
ATCACCAACGTCTGCGCGAACGAAT
LOC_Os04g42220
OsAffx.4055.1.S1_at--206--4591Chr04:24757511..24757535 (25 bp)
GCGAACGAATTCTTCTACCTCATCC
LOC_Os04g42220
OsAffx.4055.1.S1_at--1103--2871Chr04:24757541..24757565 (25 bp)
AAGGGCAAGCTGCAGCCCGGAACCA
LOC_Os04g42220
OsAffx.4055.1.S1_at--312--9031Chr04:24757551..24757575 (25 bp)
TGCAGCCCGGAACCATCTTGGAGAA
LOC_Os04g42220
OsAffx.4055.1.S1_at--933--4511Chr04:24757555..24757579 (25 bp)
GCCCGGAACCATCTTGGAGAACTGC
LOC_Os04g42220
Target Sequence 
GAAGCAGGCCGCTTCCTATCAGAGCCGTGCCCGGTGGAGTTCGAGCAGGTGAAGGGGTTCGGAGAACTTGGGGCCAAGTG
CAACGACAAGCAGACGATGAAGGAGTGCTGCGAGCTGTTCAAGAAGATCGCGTGCCCCTACAACCATCTGCTCAACGACA
TCACCAACGTCTGCGCGAACGAATTCTTCTACCTCATCCACACCAAGGGCAAGCTGCAGCCCGGAACCATCTTGGAGAAC
TGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis