Browse Element(s) Details


Os.12225.1.S1_at

Description gb:AK119237.1
DB_XREF= gi:37988860
TID=Os.12225.1
CNT=66
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.12225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D12, full insert sequence.
FL= gb:AK119237.1 gb:AK072528.1 gb:AK104637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4225011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42189NANA4+24750936..24751178hypothetical protein
LOC_Os04g42200NANA4+24752469..24753230hypothetical protein
LOC_Os04g42210Os.20512.1.S1_at11/114+24754073..24754949expressed protein
LOC_Os04g42220OsAffx.4055.1.S1_at11/114+24756877..24757966expressed protein
LOC_Os04g42230OsAffx.26428.1.S1_at11/114+24758112..24758762hypothetical protein
LOC_Os04g42240Os.55315.1.S1_at11/114+24762956..24763941expressed protein
LOC_Os04g42250Os.12225.1.S1_at11/114+24774815..24780439Transferase family protein, expressed
LOC_Os04g42260OsAffx.14239.1.S1_at10/114+24784490..24787526Protein phosphatase 2C containing protein, expressed
LOC_Os04g42270Os.384.1.S1_at11/114+24788716..2479093160S ribosomal protein L23a, putative, expressed
LOC_Os04g42280OsAffx.14240.1.S1_at11/114+24792886..24796219magnesium transporter CorA-like family protein, putative, expressed
LOC_Os04g42290Os.48212.1.S1_at8/114+24798159..24801461methyladenine glycosylase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12225.1.S1_at--286--4271Chr04:24779734..24779758 (25 bp)
CCTGGAGCTGCAGCCTGATTTATCA
LOC_Os04g42250
Os.12225.1.S1_at--291--10411Chr04:24779753..24779777 (25 bp)
TTATCAGCATTGGTCCGTGGAGCAC
LOC_Os04g42250
Os.12225.1.S1_at--240--5951Chr04:24779772..24779796 (25 bp)
GAGCACACACTTTCCGGTGTCCGAA
LOC_Os04g42250
Os.12225.1.S1_at--452--7711Chr04:24779814..24779838 (25 bp)
GGGTGCGCTTGCCAATTCATGATGC
LOC_Os04g42250
Os.12225.1.S1_at--873--7791Chr04:24779870..24779894 (25 bp)
GGTCCTGGTGGCATCGCCTATGAAG
LOC_Os04g42250
Os.12225.1.S1_at--1157--5311Chr04:24779891..24779915 (25 bp)
GAAGGGCTGGCGTTTGTCCTCCCAA
LOC_Os04g42250
Os.12225.1.S1_at--867--991Chr04:24779925..24779949 (25 bp)
AGGATGGTAGCCTATCCATAGCCAT
LOC_Os04g42250
Os.12225.1.S1_at--80--311Chr04:24779942..24779966 (25 bp)
ATAGCCATCTCATTGCAGGCTGAGC
LOC_Os04g42250
Os.12225.1.S1_at--754--4271Chr04:24780098..24780122 (25 bp)
CCTGTTGAGCAAATTGTCTGGCCAC
LOC_Os04g42250
Os.12225.1.S1_at--141--5191Chr04:24780143..24780167 (25 bp)
GCAAGGATATTTGGCCATCACCACA
LOC_Os04g42250
Os.12225.1.S1_at--970--1671Chr04:24780167..24780191 (25 bp)
AGCCGTGTGACGATGTGAGCAACCA
LOC_Os04g42250
Target Sequence 
CCTGGAGCTGCAGCCTGATTTATCAGCATTGGTCCGTGGAGCACACACTTTCCGGTGTCCGAACCTCGGGCTCACCAGCT
GGGTGCGCTTGCCAATTCATGATGCNGATTTTGGATGGGGAAGACCAGTGTTCATGGGTCCTGGTGGCATCGCCTATGAA
GGGCTGGCGTTTGTCCTCCCAAGCGCGAACAAGGATGGTAGCCTATCCATAGCCATCTCATTGCAGGCTGAGCACATGGA
GAAGTTCAGGAAGCTGATCTTCGAGGTGTAAGCAGACTACTTATGTTATGTCAGGGAGAAGTTGTAGAGCTAGAGTTCTC
AGGTAAAATACCTTCAAGTGAGTCATGGGGGCTATGCTCTTGCTCCTGTTGAGCAAATTGTCTGGCCACNTTCTCTTGTA
CCTTAGCTTGCAAGGATATTTGGCCATCACCACAGCCGTGTGACGATGTGAGCAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis