Browse Element(s) Details


OsAffx.14240.1.S1_at

Description tigr:9632.m04034
TID=OsAffx.14240.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CorA-like Mg2+ transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4228011/11magnesium transporter CorA-like family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42250Os.12225.1.S1_at11/114+24774815..24780439Transferase family protein, expressed
LOC_Os04g42260OsAffx.14239.1.S1_at10/114+24784490..24787526Protein phosphatase 2C containing protein, expressed
LOC_Os04g42270Os.384.1.S1_at11/114+24788716..2479093160S ribosomal protein L23a, putative, expressed
LOC_Os04g42280OsAffx.14240.1.S1_at11/114+24792886..24796219magnesium transporter CorA-like family protein, putative, expressed
LOC_Os04g42290Os.48212.1.S1_at8/114+24798159..24801461methyladenine glycosylase family protein, putative, expressed
LOC_Os04g42310OsAffx.4056.1.S1_s_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42310OsAffx.4056.1.S1_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42320Os.18716.1.S1_at11/114+24819826..24826676AT hook motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14240.1.S1_at--251--871Chr04:24794327..24794351 (25 bp)
ATGGCTGAAATGTACCTCACAGAGA
LOC_Os04g42280
OsAffx.14240.1.S1_at--1074--7491Chr04:24794412..24794436 (25 bp)
GTGGATTTGGTTCATCTTTCTCTGC
LOC_Os04g42280
OsAffx.14240.1.S1_at--721--9411Chr04:24794583..24794607 (25 bp)
TCGTGGTCATTGATTACACCCTCAG
LOC_Os04g42280
OsAffx.14240.1.S1_at--566--10471Chr04:24794596..24794620 (25 bp)
TTACACCCTCAGCAAGTTAACTTCG
LOC_Os04g42280
OsAffx.14240.1.S1_at--1017--8131Chr04:24795988..24796012 (25 bp)
GGACAACGTCCGAAACCAACTGATC
LOC_Os04g42280
OsAffx.14240.1.S1_at--522--3111Chr04:24796014..24796038 (25 bp)
AATTTGAACTGCTGCTGACCACGGC
LOC_Os04g42280
OsAffx.14240.1.S1_at--775--1931Chr04:24796034..24796058 (25 bp)
ACGGCTACATTCGTGGTGGCCATCT
LOC_Os04g42280
OsAffx.14240.1.S1_at--313--8631Chr04:24796047..24796071 (25 bp)
TGGTGGCCATCTTCGGAGTTGTCTC
LOC_Os04g42280
OsAffx.14240.1.S1_at--628--2971Chr04:24796109..24796133 (25 bp)
AATGTACCACATGCGTTCGAATGGA
LOC_Os04g42280
OsAffx.14240.1.S1_at--143--5291Chr04:24796127..24796151 (25 bp)
GAATGGACGCTTGTCATTACAGGCG
LOC_Os04g42280
OsAffx.14240.1.S1_at--1105--8291Chr04:24796157..24796181 (25 bp)
GGCTTAGTCATATTCTGCTGCTTCA
LOC_Os04g42280
Target Sequence 
ATGGCTGAAATGTACCTCACAGAGAAGAAGAGGAGGATGGAAGCATCATTGCTAGAGGAGCAGGCGTTTCAGGGGATGGG
CAATAGTGGATTTGGTTCATCTTTCTCTGCTCCAGTTTCGCCAGTTTCCTCACCCCCTGCTTCTCGAAGGCTTGAGAAGG
AATTGAGTTTTGCCAGAAGTAGGCATGACAGCTTCAAGAGTGCAGACAGTAGTCAGTACAGCATAGAAGAACTTGAAATG
TTGTTAGAGGCTTATTTCGTGGTCATTGATTACACCCTCAGCAAGTTAACTTCGCTGAAGGAGTATATTGATGATACAGA
GGATTTCATCAACATACAACTGGACAACGTCCGAAACCAACTGATCCAATTTGAACTGCTGCTGACCACGGCTACATTCG
TGGTGGCCATCTTCGGAGTTGTCTCGGGAGTTTTTGGCATGAACTTTGAGGTGGACTTGTTTAATGTACCACATGCGTTC
GAATGGACGCTTGTCATTACAGGCGTATGCGGCTTAGTCATATTCTGCTGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis