Browse Element(s) Details


OsAffx.4056.1.S1_s_at

Description tigr:9632.m04037
TID=OsAffx.4056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=K+ channel tetramerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4231011/11K+ channel tetramerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42280OsAffx.14240.1.S1_at11/114+24792886..24796219magnesium transporter CorA-like family protein, putative, expressed
LOC_Os04g42290Os.48212.1.S1_at8/114+24798159..24801461methyladenine glycosylase family protein, putative, expressed
LOC_Os04g42310OsAffx.4056.1.S1_s_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42310OsAffx.4056.1.S1_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42320Os.18716.1.S1_at11/114+24819826..24826676AT hook motif family protein, expressed
LOC_Os04g42330Os.14766.1.S1_at11/114+24829333..24835384Spc97/Spc98 family protein, expressed
LOC_Os04g42340Os.8599.1.S1_at11/114+24837573..24839874expressed protein
LOC_Os04g42350OsAffx.14241.1.S1_at11/114+24840694..24842884heavy metal-associated domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0008076cellular_componentvoltage-gated potassium channel complex
GO:0016020cellular_componentmembrane
GO:0005249molecular_functionvoltage-gated potassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4056.1.S1_s_at--593--5891Chr04:24816369..24816393 (25 bp)
GAGCTCCCGGAGCAAGTTCATGAAC
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--723--7811Chr04:24816361..24816385 (25 bp)
GGAGCAAGTTCATGAACCGGAAGGT
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--271--8971Chr04:24816349..24816373 (25 bp)
TGAACCGGAAGGTGCCCAGCGAGGA
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--863--4351Chr04:24816334..24816358 (25 bp)
CCAGCGAGGAGAGCTGCTACCCGAA
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--90--1591Chr04:24816289..24816313 (25 bp)
AGCTCTTCTCGTCGATGAACGACAG
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--832--8971Chr04:24816274..24816298 (25 bp)
TGAACGACAGCATCTCCGTCTTCAG
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--878--1851Chr04:24816271..24816295 (25 bp)
ACGACAGCATCTCCGTCTTCAGTGG
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--166--451Chr04:24816263..24816287 (25 bp)
ATCTCCGTCTTCAGTGGCCCCGAGT
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--1093--1071Chr04:24816251..24816275 (25 bp)
AGTGGCCCCGAGTGCGTCCTGACGT
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--583--7231Chr04:24816236..24816260 (25 bp)
GTCCTGACGTCCACGCTGCGGAGGA
LOC_Os04g42310
OsAffx.4056.1.S1_s_at--585--9151Chr04:24816194..24816218 (25 bp)
TGCGACTTCTCCATCGGAGGCGATC
LOC_Os04g42310
Target Sequence 
GAGCTCCCGGAGCAAGTTCATGAACCGGAAGGTGCCCAGCGAGGAGAGCTGCTACCCGAAGCTCGCCACGCACGGCGGGC
AGCTCTTCTCGTCGATGAACGACAGCATCTCCGTCTTCAGTGGCCCCGAGTGCGTCCTGACGTCCACGCTGCGGAGGAGC
CACGGCGGCGCCATCTGCGACTTCTCCATCGGAGGCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4056.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis