Browse Element(s) Details


Os.14766.1.S1_at

Description gb:AK103837.1
DB_XREF= gi:32989046
TID=Os.14766.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148G19, full insert sequence.
FL= gb:AK103837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4233011/11Spc97/Spc98 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42310OsAffx.4056.1.S1_s_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42310OsAffx.4056.1.S1_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42320Os.18716.1.S1_at11/114+24819826..24826676AT hook motif family protein, expressed
LOC_Os04g42330Os.14766.1.S1_at11/114+24829333..24835384Spc97/Spc98 family protein, expressed
LOC_Os04g42340Os.8599.1.S1_at11/114+24837573..24839874expressed protein
LOC_Os04g42350OsAffx.14241.1.S1_at11/114+24840694..24842884heavy metal-associated domain containing protein
LOC_Os04g42360Os.52412.1.S1_at11/114+24843423..24848035expressed protein
LOC_Os04g42370Os.52350.1.S1_at11/114+24848539..24856104expressed protein
LOC_Os04g42380Os.9405.1.S1_at11/114+24857706..2485994040S ribosomal protein S11, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007020biological_processmicrotubule nucleation
GO:0005635cellular_componentnuclear envelope
GO:0009898cellular_componentinternal side of plasma membrane
GO:0015631molecular_functiontubulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14766.1.S1_at--394--3291Chr04:24834892..24834916 (25 bp)
CAAAGTCTTATTCCTACGCTGAGTA
LOC_Os04g42330
Os.14766.1.S1_at--649--9951Chr04:24834906..24834930 (25 bp)
TACGCTGAGTAACAGTTCACAGGCA
LOC_Os04g42330
Os.14766.1.S1_at--509--2111Chr04:24834924..24834948 (25 bp)
ACAGGCAGAACCATACTTGACTCAT
LOC_Os04g42330
Os.14766.1.S1_at--409--2071Chr04:24834938..24834962 (25 bp)
ACTTGACTCATCTTGGGCAGTGCAT
LOC_Os04g42330
Os.14766.1.S1_at--1056--8831Chr04:24834978..24835002 (25 bp)
TGATCAATGATTGCTGCGCGCCATG
LOC_Os04g42330
Os.14766.1.S1_at--635--9291Chr04:24835004..24835028 (25 bp)
TCCGCGGACTTCAGACGATTGCTAA
LOC_Os04g42330
Os.14766.1.S1_at--430--4191Chr04:24835059..24835083 (25 bp)
CCCGTCAAGGCGGTGTTCTTGTGAA
LOC_Os04g42330
Os.14766.1.S1_at--825--10071Chr04:24835151..24835175 (25 bp)
TAGTGTTAGTTCTCTTGGTGGTGTT
LOC_Os04g42330
Os.14766.1.S1_at--599--1351Chr04:24835241..24835265 (25 bp)
AGAGAAACTGCCCTGTGGTACTGCT
LOC_Os04g42330
Os.14766.1.S1_at--238--7011Chr04:24835258..24835282 (25 bp)
GTACTGCTGCCACCAATGTAACTTG
LOC_Os04g42330
Os.14766.1.S1_at--846--2011Chr04:24835310..24835334 (25 bp)
ACTAACAATTTGTCTTGGGCCGTTG
LOC_Os04g42330
Target Sequence 
CAAAGTCTTATTCCTACGCTGAGTAACAGTTCACAGGCAGAACCATACTTGACTCATCTTGGGCAGTGCATTNTTGGTGT
GGGAGTTGATCAATGATTGCTGCGCGCCATGTTCCGCGGACTTCAGACGATTGCTAAGTTTGCATGTGNNNNNNNNNNNN
NNCAGNGTGGAATTCCTCATCCCCGTCAAGGCGGTGTTCTTGTGAATGTATTGAATATTGATGAAATATGCATGGTATGC
TTCAACAAGATAGATAGTACTGTAGGATTTNTGTAGTGTTAGTTCTCTTGGTGGTGTTGGGCCGTGGGTAGTTTAGGCGT
TTCTANTTTGTTCTGTTTGAAGATTATGATTGANNNCCTACNAAGAGAAACTGCCCTGTGGTACTGCTGCCACCAATGTA
ACTTGAACTAGATNTGATGAATTAGTGACACCACTAACAATTTGTCTTGGGCCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis