Browse Element(s) Details


Os.9405.1.S1_at

Description gb:AK120520.1
DB_XREF= gi:37990143
TID=Os.9405.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124K01, full insert sequence.
FL= gb:AK120520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4238011/1140S ribosomal protein S11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42330Os.14766.1.S1_at11/114+24829333..24835384Spc97/Spc98 family protein, expressed
LOC_Os04g42340Os.8599.1.S1_at11/114+24837573..24839874expressed protein
LOC_Os04g42350OsAffx.14241.1.S1_at11/114+24840694..24842884heavy metal-associated domain containing protein
LOC_Os04g42360Os.52412.1.S1_at11/114+24843423..24848035expressed protein
LOC_Os04g42370Os.52350.1.S1_at11/114+24848539..24856104expressed protein
LOC_Os04g42380Os.9405.1.S1_at11/114+24857706..2485994040S ribosomal protein S11, putative, expressed
LOC_Os04g42399OsAffx.19542.3.S1_x_at3/114+24863702..24870238retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42420Os.8504.1.S1_at10/114+24883223..24888558nodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9405.1.S1_at--101--4551Chr04:24858535..24858559 (25 bp)
GCCCATTCACTGGTACTGTATCAAT
LOC_Os04g42380
Os.9405.1.S1_at--325--3471Chr04:24858465..24858489 (25 bp)
CAGGACCATTATTGTTCGGAGGAAT
LOC_Os04g42380
Os.9405.1.S1_at--954--3111Chr04:24858304..24858328 (25 bp)
AATATTCCTGCTCACATTTCACCGT
LOC_Os04g42380
Os.9405.1.S1_at--426--1271Chr04:24858260..24858284 (25 bp)
AGATCACGTGATCATTGGCCAGTGC
LOC_Os04g42380
Os.9405.1.S1_at--502--4991Chr04:24858046..24858069 (24 bp)
GCAGGCCACTGTCAAAGACCGTGAG
LOC_Os04g42380
Os.9405.1.S1_at--297--3851Chr04:24858011..24858035 (25 bp)
CTGAAGGTCATTCCGGCAGGGTCAA
LOC_Os04g42380
Os.9405.1.S1_at--255--6551Chr04:24857902..24857926 (25 bp)
GATTTTGATGCCACCTAGATGTCTT
LOC_Os04g42380
Os.9405.1.S1_at--1111--10031Chr04:24857887..24857911 (25 bp)
TAGATGTCTTTCTCGTGTCTACCAT
LOC_Os04g42380
Os.9405.1.S1_at--625--10491Chr04:24857792..24857816 (25 bp)
TTAAGAAGTTTCTGCGCCCATGTCT
LOC_Os04g42380
Os.9405.1.S1_at--55--4551Chr04:24857777..24857801 (25 bp)
GCCCATGTCTGTCTGTGTACTGATC
LOC_Os04g42380
Os.9405.1.S1_at--277--8751Chr04:24857762..24857786 (25 bp)
TGTACTGATCGTTTTCCCATTCAAT
LOC_Os04g42380
Target Sequence 
GCCCATTCACTGGTACTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGNCATAGTGCTAAGATGAACAGGACCATT
ATTGTTCGGAGGAATTATCTGCACTTTGTCAAGAAGTACCAGAGGTACGAGAAGAGGCACTCCAATATTCCTGCTCACAT
TTCACCGTGCTTCCGTGTTAAGGAAGGAGATCACGTGATCATTGGCCAGTGCAGGCCACTGTCAAAGACCGTGAGGTTCA
ATGTGCTGAAGGTCATTCCGGCAGGGTCAAAGAGTGGTGCAGGGAAGAAGGTTTTCACAGCCGCTTAAGATGTATATGAG
GAGATATTCAGGGTTCTGAAAGCTTTGATCATGAGATTTTGATGCCACCTAGATGTCTTTCTCGTGTCTACCATCTTGAC
TAGACAAGAGTTTACCTTTCTGTACTAGGAATTTGACTTGACTTTACTTGTCAAGCTTAAAATCTTAAGAAGTTTCTGCG
CCCATGTCTGTCTGTGTACTGATCGTTTTCCCATTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis