Browse Element(s) Details


Os.18716.1.S1_at

Description gb:AK068612.1
DB_XREF= gi:32978629
TID=Os.18716.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155D11, full insert sequence.
FL= gb:AK068884.1 gb:AK068612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4232011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42280OsAffx.14240.1.S1_at11/114+24792886..24796219magnesium transporter CorA-like family protein, putative, expressed
LOC_Os04g42290Os.48212.1.S1_at8/114+24798159..24801461methyladenine glycosylase family protein, putative, expressed
LOC_Os04g42310OsAffx.4056.1.S1_s_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42310OsAffx.4056.1.S1_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42320Os.18716.1.S1_at11/114+24819826..24826676AT hook motif family protein, expressed
LOC_Os04g42330Os.14766.1.S1_at11/114+24829333..24835384Spc97/Spc98 family protein, expressed
LOC_Os04g42340Os.8599.1.S1_at11/114+24837573..24839874expressed protein
LOC_Os04g42350OsAffx.14241.1.S1_at11/114+24840694..24842884heavy metal-associated domain containing protein
LOC_Os04g42360Os.52412.1.S1_at11/114+24843423..24848035expressed protein
LOC_Os04g42370Os.52350.1.S1_at11/114+24848539..24856104expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18716.1.S1_at--483--2731Chr04:24820308..24820332 (25 bp)
AAGCACTCCCAAAGCTGCTGATGGA
LOC_Os04g42320
Os.18716.1.S1_at--547--7451Chr04:24820208..24820232 (25 bp)
GTGTCTGCTAAAATTTCTACTGGAA
LOC_Os04g42320
Os.18716.1.S1_at--4--9811Chr04:24820161..24820185 (25 bp)
TAACTAATTTGCTCTGGCCTTGTGC
LOC_Os04g42320
Os.18716.1.S1_at--820--7871Chr04:24820097..24820121 (25 bp)
GGTTTTTGGCATGAGCAGCCTAGCA
LOC_Os04g42320
Os.18716.1.S1_at--832--10411Chr04:24820070..24820094 (25 bp)
TTATATGGCTTCCATCCCTTGGCTG
LOC_Os04g42320
Os.18716.1.S1_at--229--531Chr04:24820022..24820046 (25 bp)
ATCGACCGTCACGAAACAGCTGGTA
LOC_Os04g42320
Os.18716.1.S1_at--771--6771Chr04:24819962..24819986 (25 bp)
GTTACTTTTGTTCCTTGTGGTCAGC
LOC_Os04g42320
Os.18716.1.S1_at--914--8591Chr04:24819945..24819969 (25 bp)
TGGTCAGCTGTGAGCCTCTAGCAAA
LOC_Os04g42320
Os.18716.1.S1_at--701--2251Chr04:24819923..24819947 (25 bp)
AAATATGGTTTCTTGCTTGCTGTCG
LOC_Os04g42320
Os.18716.1.S1_at--1131--10691Chr04:24819907..24819931 (25 bp)
TTGCTGTCGTTCAACCCTTATTAGA
LOC_Os04g42320
Os.18716.1.S1_at--356--3831Chr04:24819873..24819897 (25 bp)
CTGCTGGAGCTATTTGAGACGTCAA
LOC_Os04g42320
Target Sequence 
AAGCACTCCCAAAGCTGCTGATGGATCCAAGACAAATGGTCTTTCGACCAAAAGAAAGCAAAAGGAGAAAGAAGGCGAGT
CATCTGAAGAGGAAGAGCATGTGTCTGCTAAAATTTCTACTGGAAAGAAGCGCAGAAGGAAGGCTCATAACTAATTTGCT
CTGGCCTTGTGCAGTTCTTCCAAGGGGTACTTATGAGGCATGCAGTCTGAAGGTTTTTGGCATGAGCAGCCTAGCAATTT
ATATGGCTTCCATCCCTTGGCTGGTTGCCTGCCAAGTCTTGCCCTAATCGACCGTCACGAAACAGCTGGTAGTTGTAGCA
GTTGCAGTGGTAGTTGTAATGTAGGTGTTACTTTTGTTCCTTGTGGTCAGCTGTGAGCCTCTAGCAAATATGGTTTCTTG
CTTGCTGTCGTTCAACCCTTATTAGATTGTATTTTCTGCTGGAGCTATTTGAGACGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis