Browse Element(s) Details


OsAffx.14239.1.S1_at

Description tigr:9632.m04031
TID=OsAffx.14239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein phosphatase 2C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4226010/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42240Os.55315.1.S1_at11/114+24762956..24763941expressed protein
LOC_Os04g42250Os.12225.1.S1_at11/114+24774815..24780439Transferase family protein, expressed
LOC_Os04g42260OsAffx.14239.1.S1_at10/114+24784490..24787526Protein phosphatase 2C containing protein, expressed
LOC_Os04g42270Os.384.1.S1_at11/114+24788716..2479093160S ribosomal protein L23a, putative, expressed
LOC_Os04g42280OsAffx.14240.1.S1_at11/114+24792886..24796219magnesium transporter CorA-like family protein, putative, expressed
LOC_Os04g42290Os.48212.1.S1_at8/114+24798159..24801461methyladenine glycosylase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14239.1.S1_at--1058--6331Chr04:24785773..24785797 (25 bp)
GATGCTCGTTGTGTAATCTCAAGGA
LOC_Os04g42260
OsAffx.14239.1.S1_at--700--7111Chr04:24785915..24785936 (22 bp)
GTCAGGCAATCGCTTTATCCAATGA
LOC_Os04g42260
OsAffx.14239.1.S1_at--553--3451Chr04:24785981..24786005 (25 bp)
CAGGAGGTTCCGTATCTTTTTCTAG
LOC_Os04g42260
OsAffx.14239.1.S1_at--826--10691Chr04:24786167..24786191 (25 bp)
TTGCGTCCTGAACAACAATTGCTGA
LOC_Os04g42260
OsAffx.14239.1.S1_at--72--3171Chr04:24786183..24786207 (25 bp)
AATTGCTGACTTGTTCTCCTGAAAT
LOC_Os04g42260
OsAffx.14239.1.S1_at--145--112Chr08:28168040..28168110 (24 bp)
ATTCGAGCTGACCAATTAACTGATG
NONE
OsAffx.14239.1.S1_at--379--6491Chr04:24786318..24786342 (25 bp)
GATACCGAGTTTCTTGTTATAGCAT
LOC_Os04g42260
OsAffx.14239.1.S1_at--791--8531NONE
TGGAGTCTGGGATGTCTTGGCAAAC
NONE
OsAffx.14239.1.S1_at--137--6651Chr04:24786956..24786980 (25 bp)
GTTGATTTTGTACGCCTTCACTTAA
LOC_Os04g42260
OsAffx.14239.1.S1_at--607--8711Chr04:24787342..24787366 (25 bp)
TGTCGGTAATCTGCGAGAGCCTTCT
LOC_Os04g42260
OsAffx.14239.1.S1_at--503--9631Chr04:24787367..24787391 (25 bp)
TCAGGAGGCCATTACACGAGACCCA
LOC_Os04g42260
Target Sequence 
GATGCTCGTTGTGTAATCTCAAGGAATGGTCAGGCAATCGCTTTATCCAATGATCACAAACCAAATTTTCCGGAGGAAAC
TCAGAGAATAGTAGCTGCAGGAGGTTCCGTATCTTTTTCTAGGGGTTCCCACCGTGTTAATAATGGAATTGCAGTATCAA
GAGCAATCGGTATAGCTTATATGTTTGTTGGCGGGGATTTATCTTACAAGAACAACAAAAAGTTGCGTCCTGAACAACAA
TTGCTGACTTGTTCTCCTGAAATTCGAGCTGACCAATTAACTGATGATACCGAGTTTCTTGTTATAGCATGTGATGGAGT
CTGGGATGTCTTGGCAAACCAGGCTGTGGTTGATTTTGTACGCCTTCACTTAAACAATGGGGTGGAGCTGTCGGTAATCT
GCGAGAGCCTTCTTCAGGAGGCCATTACACGAGACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis