Browse Element(s) Details


Os.55315.1.S1_at

Description gb:AK107850.1
DB_XREF= gi:32993059
TID=Os.55315.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-A08, full insert sequence.
FL= gb:AK107850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4224011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42150OsAffx.4054.1.S1_at11/114+24739562..24740223hypothetical protein
LOC_Os04g42160OsAffx.26426.1.S1_at11/114+24742827..24743033hypothetical protein
LOC_Os04g42170OsAffx.26427.1.S1_at11/114+24744139..24744477hypothetical protein
LOC_Os04g42180NANA4+24745426..24748303transposon protein, putative, Mariner sub-class
LOC_Os04g42189NANA4+24750936..24751178hypothetical protein
LOC_Os04g42200NANA4+24752469..24753230hypothetical protein
LOC_Os04g42210Os.20512.1.S1_at11/114+24754073..24754949expressed protein
LOC_Os04g42220OsAffx.4055.1.S1_at11/114+24756877..24757966expressed protein
LOC_Os04g42230OsAffx.26428.1.S1_at11/114+24758112..24758762hypothetical protein
LOC_Os04g42240Os.55315.1.S1_at11/114+24762956..24763941expressed protein
LOC_Os04g42250Os.12225.1.S1_at11/114+24774815..24780439Transferase family protein, expressed
LOC_Os04g42260OsAffx.14239.1.S1_at10/114+24784490..24787526Protein phosphatase 2C containing protein, expressed
LOC_Os04g42270Os.384.1.S1_at11/114+24788716..2479093160S ribosomal protein L23a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55315.1.S1_at--276--9531Chr04:24763510..24763534 (25 bp)
TCTAACGTTACCAAACTTTCGATAG
LOC_Os04g42240
Os.55315.1.S1_at--1050--6971Chr04:24763391..24763415 (25 bp)
GTACCTCCACACAGAAGATCGATCG
LOC_Os04g42240
Os.55315.1.S1_at--362--8291Chr04:24763363..24763387 (25 bp)
GGCTGCCACGGTATCTTACCGTTAT
LOC_Os04g42240
Os.55315.1.S1_at--330--10471Chr04:24763348..24763372 (25 bp)
TTACCGTTATTACCAGCTCAGCTAG
LOC_Os04g42240
Os.55315.1.S1_at--152--5991Chr04:24763304..24763328 (25 bp)
GAGACAATATGCATCGATCCACCAG
LOC_Os04g42240
Os.55315.1.S1_at--998--511Chr04:24763292..24763316 (25 bp)
ATCGATCCACCAGGCAGATGCTGGA
LOC_Os04g42240
Os.55315.1.S1_at--1136--5811Chr04:24763225..24763249 (25 bp)
GACCCGCGTGAGTCGTGACGATCAG
LOC_Os04g42240
Os.55315.1.S1_at--72--8951Chr04:24763210..24763234 (25 bp)
TGACGATCAGGAGCGCGCCCTTGCG
LOC_Os04g42240
Os.55315.1.S1_at--1078--6591Chr04:24763180..24763204 (25 bp)
GTTGGCATGCTATGTCGTTCCGTGC
LOC_Os04g42240
Os.55315.1.S1_at--209--1651Chr04:24763058..24763082 (25 bp)
AGCGAGTGATCGTGTACGCCCGCGC
LOC_Os04g42240
Os.55315.1.S1_at--987--598Chr11:8932835..8932854 (20 bp)
ATGCCCCTCAACTGTGATCGAAATT
NONE
Target Sequence 
TCTAACGTTACCAAACTTTCGATAGAACCAAAACATACCAAATTTTAATAACATCAAATATTAGTCAGATTGATTTCGAT
AATAAAATAAACTAGCCCCAAATCAGACACCGCCGGCCCGTACCTCCACACAGAAGATCGATCGATCGGCTGCCACGGTA
TCTTACCGTTATTACCAGCTCAGCTAGCAATAAGAGTTCTGGTCGAGAGACAATATGCATCGATCCACCAGGCAGATGCT
GGAGAAGAAGGCCCGGCAGGTCGGCACGGCAGCCTGCCCCGCCGCGACCCGCGTGAGTCGTGACGATCAGGAGCGCGCCC
TTGCGCACCCGTTGGCATGCTATGTCGTTCCGTGCGCTCCGCCCGAACGCAGCACCGCTCCGCTCCGGGCGCGCTTCCGT
CATCCGCCGAGGCACCCGCTCACCACCAACGGGCAACGGGCCGCACGGCGAGAGCGAGTGATCGTGTACGCCCGCGCGTC
CTCTTTTGGAATAAGTTCACTTCATGCCCCTCAACTGTGATCGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis