Browse Element(s) Details


Os.384.1.S1_at

Description gb:C96994
DB_XREF= gi:3759736
DB_XREF=C96994
CLONE=C50449_8Z
TID=Os.384.1
CNT=79
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.384 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_181478.1 (A.thaliana) 60S ribosomal protein L23A (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4227011/1160S ribosomal protein L23a, putative, expressed
LOC_Os10g050691/11glycosyl hydrolase family 38 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42240Os.55315.1.S1_at11/114+24762956..24763941expressed protein
LOC_Os04g42250Os.12225.1.S1_at11/114+24774815..24780439Transferase family protein, expressed
LOC_Os04g42260OsAffx.14239.1.S1_at10/114+24784490..24787526Protein phosphatase 2C containing protein, expressed
LOC_Os04g42270Os.384.1.S1_at11/114+24788716..2479093160S ribosomal protein L23a, putative, expressed
LOC_Os04g42280OsAffx.14240.1.S1_at11/114+24792886..24796219magnesium transporter CorA-like family protein, putative, expressed
LOC_Os04g42290Os.48212.1.S1_at8/114+24798159..24801461methyladenine glycosylase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005622cellular_componentintracellular
GO:0009282cellular_componentcytosolic large ribosomal subunit (sensu Bacteria)
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome
GO:0004559molecular_functionalpha-mannosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.384.1.S1_at--1137--8951Chr04:24789187..24789211 (25 bp)
TGACACCAGACTACGATGCTCTCGA
LOC_Os04g42270
Os.384.1.S1_at--204--7791Chr04:24789129..24789153 (25 bp)
GGTGCTGCAGTAGTCTTTTGTGTCC
LOC_Os04g42270
Os.384.1.S1_at--69--10411Chr04:24789114..24789138 (25 bp)
TTTTGTGTCCTGGTCTCTATGTGAT
LOC_Os04g42270
Os.384.1.S1_at--755--131Chr04:24789074..24789098 (25 bp)
ATTACTTAGCGAATGCCTCAGTGGC
LOC_Os04g42270
Os.384.1.S1_at--118--171Chr04:24789037..24789061 (25 bp)
ATTTTGCTGCACACTTCCATGAATT
LOC_Os04g42270
Os.384.1.S1_at--816--5171Chr04:24789003..24789027 (25 bp)
GCAAGTGACTTATCGTGAGCTATTA
LOC_Os04g42270
Os.384.1.S1_at--279--4872Chr08:20932597..20932797 (25 bp)
GCTAGTATTTTCTTTGCATGCCCAA
NONE
Os.384.1.S1_at--860--4871Chr04:24788896..24788920 (25 bp)
GCTTTACTATCCCAGTTTTTCAAGT
LOC_Os04g42270
Os.384.1.S1_at--169--6411Chr04:24788833..24788857 (25 bp)
GATCTGGTACCTTAGCTTGGTTTCC
LOC_Os04g42270
Os.384.1.S1_at--381--1552Chr10:2464901..2465328 (25 bp)
AGCTTGGTTTCCATGTTGCTGTTTG
LOC_Os10g05069
Os.384.1.S1_at--358--6651Chr04:24788779..24788803 (25 bp)
GTTGACCTCACTATGTAACTGACAT
LOC_Os04g42270
Target Sequence 
TGACACCAGACTACGATGCTCTCGACGTGGCCAACAAGATTGGCATCATCTAAGTTAGGGTGCTGCAGTAGTCTTTTGTG
TCCTGGTCTCTATGTGATTGGAGTTTTGTAGCTATTACTTAGCGAATGCCTCAGTGGCTAAGTTATCACTATTTTGCTGC
ACACTTCCATGAATTTGATATAATGCAAGTGACTTATCGTGAGCTATTATATGCTTTGCAGTTGATCACTTGATTGTACC
GNTGATTGCTTNACGAGCCAGCTAGTATTTTCTTTGCATGCCCAAAATTTTGCTTTACTATCCCAGTTTTTCAAGTTAGT
ACTATAATGATCTGATCAAGCATTCTTACATTATGATCTGGTACCTTAGCTTGGTTTCCATGTTGCTGTTTGTGTTAAGA
GATCAATTGTTGACCTCACTATGTAACTGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis