Browse Element(s) Details


OsAffx.23915.1.S1_at

Description tigr:9629.m06384
TID=OsAffx.23915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6446010/11hypothetical protein
LOC_Os04g420805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein
LOC_Os01g64450Os.36345.1.S1_at10/111+37733111..37734090Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64460OsAffx.23915.1.S1_at10/111+37737511..37738223hypothetical protein
LOC_Os01g64470Os.12119.1.S1_at10/111+37738860..37739860Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23915.1.S1_at--1162--7572Chr04:24693970..24693994 (25 bp)
GGGCTACATATATGCACCTGATCAG
LOC_Os04g42080
OsAffx.23915.1.S1_at--629--651NONE
ATGCACCTGATCAGCTGCTGCATTA
NONE
OsAffx.23915.1.S1_at--961--1752Chr04:24693985..24694437 (25 bp)
ACCTGATCAGCTGCTGCATTACCTG
LOC_Os04g42080
OsAffx.23915.1.S1_at--78--4772Chr04:24694425..24694449 (25 bp)
GCTGCATTACCTGAATAAAAATAGA
LOC_Os04g42080
OsAffx.23915.1.S1_at--578--10031Chr01:37738019..37738043 (25 bp)
TAGAGAGGTGGCAACGACTCCGATT
LOC_Os01g64460
OsAffx.23915.1.S1_at--497--1331Chr01:37738022..37738046 (25 bp)
AGAGGTGGCAACGACTCCGATTCCA
LOC_Os01g64460
OsAffx.23915.1.S1_at--400--7711Chr01:37738025..37738049 (25 bp)
GGTGGCAACGACTCCGATTCCAAAT
LOC_Os01g64460
OsAffx.23915.1.S1_at--85--8211Chr01:37738028..37738052 (25 bp)
GGCAACGACTCCGATTCCAAATCAG
LOC_Os01g64460
OsAffx.23915.1.S1_at--597--2592Chr01:37738031..37738055 (25 bp)
AACGACTCCGATTCCAAATCAGACG
LOC_Os01g64460
OsAffx.23915.1.S1_at--1110--5713Chr04:24694461..24694485 (25 bp)
GACTCCGATTCCAAATCAGACGAGG
LOC_Os04g42080
OsAffx.23915.1.S1_at--731--9293Chr04:24694464..24694488 (25 bp)
TCCGATTCCAAATCAGACGAGGGTC
LOC_Os04g42080
Target Sequence 
GGGCTACATATATGCACCTGATCAGCTGCTGCATTACCTGAATAAAAATAGAGAGGTGGCAACGACTCCGATTCCAAATC
AGACGAGGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis