Browse Element(s) Details


OsAffx.11728.1.S1_at

Description tigr:9629.m06388
TID=OsAffx.11728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6450010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein
LOC_Os01g64450Os.36345.1.S1_at10/111+37733111..37734090Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64460OsAffx.23915.1.S1_at10/111+37737511..37738223hypothetical protein
LOC_Os01g64470Os.12119.1.S1_at10/111+37738860..37739860Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11728.1.S1_at--1003--10371Chr01:37752927..37752951 (25 bp)
TTTTCAGTGATCCTCTGCTTGTTAC
LOC_Os01g64500
OsAffx.11728.1.S1_at--348--10771Chr01:37752909..37752933 (25 bp)
TTGTTACCGAGTCCCTAGCCCTGAA
LOC_Os01g64500
OsAffx.11728.1.S1_at--701--9991Chr01:37752894..37752918 (25 bp)
TAGCCCTGAACCTTGTCATCAGTGT
LOC_Os01g64500
OsAffx.11728.1.S1_at--1024--2631Chr01:37752887..37752910 (24 bp)
AACCTTGTCATCAGTGTGGAACCGT
LOC_Os01g64500
OsAffx.11728.1.S1_at--124--8671NONE
TGTGGAACCGTTTCTGACAGAGCAG
NONE
OsAffx.11728.1.S1_at--1119--3411Chr01:37752304..37752328 (25 bp)
CAGAGCAGAGTGTCAGGGCAAGCCA
LOC_Os01g64500
OsAffx.11728.1.S1_at--137--7431Chr01:37752295..37752319 (25 bp)
GTGTCAGGGCAAGCCAAGTTCTTGA
LOC_Os01g64500
OsAffx.11728.1.S1_at--518--131Chr01:37752270..37752294 (25 bp)
ATTAATATACGCTGCATTTGTTGCT
LOC_Os01g64500
OsAffx.11728.1.S1_at--802--211Chr01:37752255..37752279 (25 bp)
ATTTGTTGCTTGGTTCGGCAGCTAC
LOC_Os01g64500
OsAffx.11728.1.S1_at--475--9451Chr01:37752241..37752265 (25 bp)
TCGGCAGCTACATTGCTTGGTCGAT
LOC_Os01g64500
OsAffx.11728.1.S1_at--572--7791Chr01:37752223..37752247 (25 bp)
GGTCGATGATTTTGGGTGTGTTCTT
LOC_Os01g64500
Target Sequence 
TTTTCAGTGATCCTCTGCTTGTTACCGAGTCCCTAGCCCTGAACCTTGTCATCAGTGTGGAACCGTTTCTGACAGAGCAG
AGTGTCAGGGCAAGCCAAGTTCTTGAATTAATATACGCTGCATTTGTTGCTTGGTTCGGCAGCTACATTGCTTGGTCGAT
GATTTTGGGTGTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis