Browse Element(s) Details


OsAffx.3041.1.S1_at

Description tigr:9630.m05107
TID=OsAffx.3041.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g645301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed
LOC_Os01g64580OsAffx.11730.1.S1_at10/111+37797022..37798512hypothetical protein
LOC_Os01g64590Os.12398.1.A1_at11/111+37799226..37800217Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3041.1.S1_at--407--2092Chr03:18332518..18332537 (20 bp)
ACATACAATATCTCCTCGTCACTTT
NONE
OsAffx.3041.1.S1_at--1114--3311Chr02:31790078..31790102 (25 bp)
CACTTTCCATCCCTGTCGAACAGAA
NONE
OsAffx.3041.1.S1_at--350--551Chr02:31790070..31790094 (25 bp)
ATCCCTGTCGAACAGAACCATCACG
NONE
OsAffx.3041.1.S1_at--91--1451Chr02:31790057..31790081 (25 bp)
AGAACCATCACGATCTCAAGCTGCT
NONE
OsAffx.3041.1.S1_at--352--3351Chr02:31790049..31790073 (25 bp)
CACGATCTCAAGCTGCTCAATTCAG
NONE
OsAffx.3041.1.S1_at--819--2231Chr02:31790012..31790036 (25 bp)
AAATTGGCACGCATATGTGCATATG
NONE
OsAffx.3041.1.S1_at--1064--8675Chr08:24336648..24336671 (24 bp)
TGTGCATATGCACATATCAAGAAGC
NONE
OsAffx.3041.1.S1_at--292--4531Chr02:31789958..31789982 (25 bp)
GCCGCCACCACCATGAAAAAGAAAT
NONE
OsAffx.3041.1.S1_at--250--9251Chr02:31788987..31789008 (22 bp)
TCCGCCTTTACGCTTACTTTACTCG
NONE
OsAffx.3041.1.S1_at--1114--10451Chr02:31788969..31788993 (25 bp)
TTACTCGTAAATAAGCCCAATTCCA
NONE
OsAffx.3041.1.S1_at--500--3071Chr02:31788960..31788984 (25 bp)
AATAAGCCCAATTCCAAGACGCCGG
NONE
Target Sequence 
ACATACAATATCTCCTCGTCACTTTCCATCCCTGTCGAACAGAACCATCACGATCTCAAGCTGCTCAATTCAGCAACAAG
CAAACAAATTGGCACGCATATGTGCATATGCACATATCAAGAAGCACCACAACTCCCCCGCCGCCACCACCATGAAAAAG
AAATGGATGAGAGGGAGGACCCACGTCGAGCAGCGAGCAGTAAGGACCCCATCTCCGCCTCACCCTCCTGCTCATGGCCA
TCGTCGCGGCACTGATGCGGCCGCCGGTCTCAAGGGTGACCCTTACGCGGTTGGAGTCAATGCCGTCATGGAGTTCCCCG
GCAACCCGTGGTACAGTCCCGACCGCGTCATCTACCTCCGCCTGCTCTCCGCCTTTACGCTTACTTTACTCGTAAATAAG
CCCAATTCCAAGACGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis