Browse Element(s) Details


Os.14287.2.S1_x_at

Description gb:NM_190740.1
DB_XREF= gi:34908563
GEN=P0505D12.9
TID=Os.14287.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0505D12.9 (P0505D12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0505D12.9 (P0505D12.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6456010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed
LOC_Os01g64580OsAffx.11730.1.S1_at10/111+37797022..37798512hypothetical protein
LOC_Os01g64590Os.12398.1.A1_at11/111+37799226..37800217Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14287.2.S1_x_at--406--1971Chr01:37787933..37787957 (25 bp)
ACTGAAGGGCCTGCTGCAGGTTCCA
LOC_Os01g64560
Os.14287.2.S1_x_at--1049--7891Chr01:37787951..37787975 (25 bp)
GGTTCCAGGCAATCATCTTCTAGTA
LOC_Os01g64560
Os.14287.2.S1_x_at--639--9051Chr01:37787986..37788010 (25 bp)
TGCAGGATGCTCTCAGACACAGGAA
LOC_Os01g64560
Os.14287.2.S1_x_at--384--7152Chr01:37788069..37788093 (25 bp)
GTCTTTCAACTGGACAAGCATCTGA
LOC_Os01g64560
Os.14287.2.S1_x_at--529--1531Chr01:37788085..37788109 (25 bp)
AGCATCTGACAGTCTTTCAACTGGA
LOC_Os01g64560
Os.14287.2.S1_x_at--922--8031Chr01:37788166..37788190 (25 bp)
GGAGAGTGCAAGACCGAGGCCTAAA
LOC_Os01g64560
Os.14287.2.S1_x_at--17--5891Chr01:37788221..37788245 (25 bp)
GAGCTTCGTGAAATAGTACCTAACA
LOC_Os01g64560
Os.14287.2.S1_x_at--195--7491Chr01:37789482..37789506 (25 bp)
GTGGTGCAACCTGGGCCTTTGAAGT
LOC_Os01g64560
Os.14287.2.S1_x_at--226--4451NONE
GCCTTTGAAGTTGCTGCCACAGATA
NONE
Os.14287.2.S1_x_at--752--6491Chr01:37790228..37790252 (25 bp)
GATAGTTACGCTGACTCCAGTATCT
LOC_Os01g64560
Os.14287.2.S1_x_at--50--5731Chr01:37790240..37790264 (25 bp)
GACTCCAGTATCTTGTTGCCTGTCT
LOC_Os01g64560
Target Sequence 
ACTGAAGGGCCTGCTGCAGGTTCCAGGCAATCATCTTCTAGTATAGATAAATCTGCAGGATGCTCTCAGACACAGGAAAG
TTACAAATCACAGATAAGGCTTTGGGTTGAGAATAACCATAGTGTAGGATCAGATAGTCTTTCAACTGGACAAGCATCTG
ACAGTCTTTCAACTGGACAGTGTAAAAGGAGTGATGAAATAGGTAAATCAAACCGAAAGAGATCTAGACCAGGGGAGAGT
GCAAGACCGAGGCCTAAAGATCGGCAAATGATTCAAGACCGTATAAAGGAGCTTCGTGAAATAGTACCTAACAGTGCAAA
GTGTAGCATTGATACATTACTGGAGAAGACCATTAAGCATATGCTTTTCTTGCAAAATGTTGCAAAGCATGCTGATAAGT
TGAAGGGATCTGGGGAGCCAAAGCAGATTGTTAGTCATGAAGAAGGTTTGCTCTTGAAAGATAACTTTGAAGGTGGTGCA
ACCTGGGCCTTTGAAGTTGCTGCCACAGATAGTTACGCTGACTCCAGTATCTTGTTGCCTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14287.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis