Browse Element(s) Details


Os.14287.1.S1_at

Description gb:AK099677.1
DB_XREF= gi:32984886
TID=Os.14287.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0505D12.9 (P0505D12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070F08, full insert sequence.
FL= gb:AK099677.1 gb:AK068033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6456011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed
LOC_Os01g64580OsAffx.11730.1.S1_at10/111+37797022..37798512hypothetical protein
LOC_Os01g64590Os.12398.1.A1_at11/111+37799226..37800217Dof domain, zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14287.1.S1_at--972--3551Chr01:37790011..37790035 (25 bp)
CATCTTCTGGAACCTAGCACTGGGA
LOC_Os01g64560
Os.14287.1.S1_at--432--3331Chr01:37790028..37790052 (25 bp)
CACTGGGAGCTCTATTTTGTCAGCA
LOC_Os01g64560
Os.14287.1.S1_at--838--8811Chr01:37790055..37790079 (25 bp)
TGTTGAGAACACTAGCCTGCCGCGC
LOC_Os01g64560
Os.14287.1.S1_at--28--6851Chr01:37790114..37790138 (25 bp)
GTTTCTCCAACTGCTTGTGACACGA
LOC_Os01g64560
Os.14287.1.S1_at--449--3611Chr01:37790127..37790151 (25 bp)
CTTGTGACACGATGTACCATACCTC
LOC_Os01g64560
Os.14287.1.S1_at--1097--10331Chr01:37790387..37790411 (25 bp)
TTTTAGGCAGGCTCCACAAGTGTAA
LOC_Os01g64560
Os.14287.1.S1_at--1161--9611Chr01:37790487..37790511 (25 bp)
TCATGTGCCCATTTGGCTCTCTGGA
LOC_Os01g64560
Os.14287.1.S1_at--242--9511Chr01:37790504..37790528 (25 bp)
TCTCTGGATCTGCTAACCTGGTTGT
LOC_Os01g64560
Os.14287.1.S1_at--192--6891Chr01:37790529..37790553 (25 bp)
GTATTTGCAGTTCGGTCTTTTTCCT
LOC_Os01g64560
Os.14287.1.S1_at--722--10371Chr01:37790547..37790571 (25 bp)
TTTTCCTCTGTTCAGCAAGTACCAC
LOC_Os01g64560
Os.14287.1.S1_at--82--671Chr01:37790576..37790600 (25 bp)
ATGAGTGCCTCACCATTTTTTACTG
LOC_Os01g64560
Target Sequence 
CATCTTCTGGAACCTAGCACTGGGAGCTCTATTTTGTCAGCAGNTGTTGAGAACACTAGCCTGCCGCGCGATAGNTTTCT
TTCCATCGTCTATTCCAGCCNCTGGTTTCTCCAACTGCTTGTGACACGATGTACCATACCTCNAGCAAGTGGAGCGCTGT
GAGTGGGTAAAGTTTCACCTGCCGTGACCTTTTCTCCCTGCCTTGTTCTAGCTGCCACAGATAGTTACGCTGACTCCAGT
ATNTTGTTGCCTGTCTCCACGGCTGNCGTTGTGGCAAATTANTGNTCAGTAAGGGAGAGATGTGTGTTTTGTCCTNAACC
TTAAACTNCATNGCAGCCAGCCTTNGTGAGGGAAGAAGNTTTAGCGTAGGAAATTGTTGTTTTAGGCAGGCTCCACAAGT
GTAAGAAATGCAGTACATAAATGATNAGAGATTTAGAGTTAGGATAGCATCAGGTTTTTCTGNTATGTAATATNTGCATT
CATGTGCCCATTTGGCTCTCTGGATCTGCTAACCTGGTTGTGTATTTGCAGTTCGGTCTTTTTCCTCTGTTCAGCAAGTA
CCACTTGAATGAGTGCCTCACCATTTTTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis