Browse Element(s) Details


OsAffx.21714.1.S1_x_at

Description gb:NM_190741.1
DB_XREF= gi:34908565
GEN=P0505D12.10
TID=OsAffx.21714.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0505D12.10 (P0505D12.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6457011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed
LOC_Os01g64580OsAffx.11730.1.S1_at10/111+37797022..37798512hypothetical protein
LOC_Os01g64590Os.12398.1.A1_at11/111+37799226..37800217Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21714.1.S1_x_at--529--3391Chr01:37791694..37791718 (25 bp)
CAGCTCGTGAGGACGCTCGCCGACG
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--206--9311Chr01:37791663..37791687 (25 bp)
TCCCGGCGTGGGTGATCGGCCTCAA
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--124--8851Chr01:37791651..37791675 (25 bp)
TGATCGGCCTCAACGCGGAGCTCCT
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--485--6991Chr01:37791542..37791566 (25 bp)
GTACGGCCGGCACCGCGTGAAGATC
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--582--1771Chr01:37791531..37791555 (25 bp)
ACCGCGTGAAGATCGTGGGCGCCGG
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--684--8531Chr01:37791432..37791456 (25 bp)
TGGACCGGCTGTGCACGTGCGCGGA
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--31--8711Chr01:37791231..37791255 (25 bp)
TGTGCCTGGCGCTGCGGTCGGAGCA
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--530--1471Chr01:37791186..37791210 (25 bp)
AGAAGGCGCACGAGGTGCTCAAGCT
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--551--9091Chr01:37791171..37791195 (25 bp)
TGCTCAAGCTGCACTCCAGGGTCTG
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--1005--9711Chr01:37791168..37791192 (25 bp)
TCAAGCTGCACTCCAGGGTCTGGAG
LOC_Os01g64570
OsAffx.21714.1.S1_x_at--57--9451Chr01:37791150..37791174 (25 bp)
TCTGGAGGGCCTCGCCATGCTTGTC
LOC_Os01g64570
Target Sequence 
CAGCTCGTGAGGACGCTCGCCGACGCGGTGGTCCCGGCGTGGGTGATCGGCCTCAACGCGGAGCTCCTCGCCGAGGTGGT
CGGCGTGGTCCGCGACCGCGTCTCGGCGCGGGCCACCAAGGCGTCCCTCCACGCGCTCGCCGCGCTCTGCCCGTACGGCC
GGCACCGCGTGAAGATCGTGGGCGCCGGCGCGGTGGCGGCGCTGGTGGAGCTGCTGCTGGACGAGCCCGAGCGGCGCGTG
TGCGAGCTGGCGCTGGCCGTGCTGGACCGGCTGTGCACGTGCGCGGAGGGGCGCGCGGAGCTGGTGGCGCACGCGGCGGG
CGTGGCCGTGGTGGGGAAGAAGGTGCTGCGGGTGTCGGAGGCGGCGAGCGAGCGGGCGGTGCGCGTGCTGCGGTCGGTGG
CGCGGCACGCGGCGACGCCGGCGGTGCTGCAGGAGATGGCGCAGTGCGGCGTGGTGGGGAAGCTGTGCCTGGCGCTGCGG
TCGGAGCAGTGCGGGGTGAAGACCAAGGAGAAGGCGCACGAGGTGCTCAAGCTGCACTCCAGGGTCTGGAGGGCCTCGCC
ATGCTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21714.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis