Browse Element(s) Details


Os.52231.1.S1_at

Description gb:AK065779.1
DB_XREF= gi:32975797
TID=Os.52231.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013039E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039E23, full insert sequence.
FL= gb:AK065779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6452010/11Uricase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64530OsAffx.3041.1.S1_at1/111+37776934..37777721hypothetical protein
LOC_Os01g64540Os.17746.1.S1_s_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64540Os.20090.1.S1_at11/111+37778260..37779826UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64550NANA1+37782254..37783475hypothetical protein
LOC_Os01g64560Os.14287.1.S1_at11/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.2.S1_x_at10/111+37784374..37790600expressed protein
LOC_Os01g64560Os.14287.1.S1_a_at8/111+37784374..37790600expressed protein
LOC_Os01g64570OsAffx.21714.1.S1_x_at11/111+37791119..37792333U-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006144biological_processpurine base metabolism
GO:0004846molecular_functionurate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52231.1.S1_at--984--1391Chr01:37769523..37769547 (25 bp)
AGACAACTCAGGTATTTTTGCCGGA
LOC_Os01g64520
Os.52231.1.S1_at--485--151Chr01:37769510..37769534 (25 bp)
ATTTTTGCCGGATGCTAACCTTTCA
LOC_Os01g64520
Os.52231.1.S1_at--1001--4251Chr01:37769503..37769527 (25 bp)
CCGGATGCTAACCTTTCACACTGGG
LOC_Os01g64520
Os.52231.1.S1_at--359--7671Chr01:37769480..37769504 (25 bp)
GGGTTGCTTGGGTTCACTTGTAAAG
LOC_Os01g64520
Os.52231.1.S1_at--145--7331Chr01:37769409..37769433 (25 bp)
GTGCTACTACGCATGCTTGAAGGAA
LOC_Os01g64520
Os.52231.1.S1_at--200--2331Chr01:37769363..37769387 (25 bp)
AAAGTGCTAGCTGAAGTGTCAGAAA
LOC_Os01g64520
Os.52231.1.S1_at--440--2431Chr01:37769275..37769299 (25 bp)
AAAACCAGACTGCTTTTTGTCATAC
LOC_Os01g64520
Os.52231.1.S1_at--613--2031Chr01:37769233..37769257 (25 bp)
ACTAGTGCATGCTAACCTTTCACCA
LOC_Os01g64520
Os.52231.1.S1_at--421--9191Chr01:37769113..37769137 (25 bp)
TGCCTGGTGGAGGTCTGCTACTCTT
LOC_Os01g64520
Os.52231.1.S1_at--782--7171Chr01:37769101..37769125 (25 bp)
GTCTGCTACTCTTCTTATATACCTG
LOC_Os01g64520
Os.52231.1.S1_at--517--8031Chr01:37767317..37767341 (25 bp)
GGAGGGAGTACCAACTTGCACATTT
NONE
Target Sequence 
AGACAACTCAGGTATTTTTGCCGGATGCTAACCTTTCACACTGGGGTTGCTTGGGTTCACTTGTAAAGACAGTTTATGTA
TTGTACTTTTGAACTAGGAATAAACTTGTAACAAGTGCTACTACGCATGCTTGAAGGAATTAAATGCAAAAATGTGAGGT
AAAGTGCTAGCTGAAGTGTCAGAAAAGCAAAATAATTTAACTAGTTAACTTCTGATGAAGTATAAACGAAGGAAATATAA
ATTTTAACAAAACCAGACTGCTTTTTGTCATACATATATGCTCAATTTGTACTAGTGCATGCTAACCTTTCACCACCTTG
TCTCTCTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAA
CAGAAGTAACTGCCTGGTGGAGGTCTGCTACTCTTCTTATATACCTGAGAAAAAGTCAACGGCGTCATATATTAAAAAAC
GGAGGGAGTACCAACTTGCACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis