Browse Element(s) Details


OsAffx.21715.1.S1_at

Description tigr:9629.m06386
TID=OsAffx.21715.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6448011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein
LOC_Os01g64450Os.36345.1.S1_at10/111+37733111..37734090Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64460OsAffx.23915.1.S1_at10/111+37737511..37738223hypothetical protein
LOC_Os01g64470Os.12119.1.S1_at10/111+37738860..37739860Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21715.1.S1_at--750--8591Chr01:37743184..37743208 (25 bp)
TGGTCAGGGCATTCATCGCCGCCTG
LOC_Os01g64480
OsAffx.21715.1.S1_at--473--8931Chr01:37743007..37743031 (25 bp)
TGACCATCCGGAACCCGAGCAGGCG
LOC_Os01g64480
OsAffx.21715.1.S1_at--354--4231Chr01:37742993..37743017 (25 bp)
CCGAGCAGGCGGACGGCCGTCTACT
LOC_Os01g64480
OsAffx.21715.1.S1_at--1056--7291Chr01:37742963..37742987 (25 bp)
GTGCTGTCGGCGGATGGTTTCTACC
LOC_Os01g64480
OsAffx.21715.1.S1_at--98--5911Chr01:37742853..37742877 (25 bp)
GAGCTCGGGCGTGGTGTCCTGGGAC
LOC_Os01g64480
OsAffx.21715.1.S1_at--316--1832Chr05:24299309..24299676 (25 bp)
ACGCCGGCGCGTTTGGTGAAGACAA
NONE
OsAffx.21715.1.S1_at--170--8791Chr01:37742794..37742818 (25 bp)
TGTTCCCGGTGACCCTGTGGGTTCT
LOC_Os01g64480
OsAffx.21715.1.S1_at--525--9851Chr01:37742756..37742780 (25 bp)
TACAAGTACGGCGGGCTGATGACCA
LOC_Os01g64480
OsAffx.21715.1.S1_at--1059--1891Chr01:37742732..37742756 (25 bp)
ACGTCGGCGACCATGCTGTCCGCGA
LOC_Os01g64480
OsAffx.21715.1.S1_at--922--611Chr01:37742720..37742744 (25 bp)
ATGCTGTCCGCGAGGTGCCCGCTCG
LOC_Os01g64480
OsAffx.21715.1.S1_at--141--4231Chr01:37742702..37742726 (25 bp)
CCGCTCGCGCTTAAGCTCGTGGAGG
LOC_Os01g64480
Target Sequence 
TGGTCAGGGCATTCATCGCCGCCTGCACCGTCGTCGTCGCTGTCGCCGTCCTCGTCTGGCTCATCTACCGGCCGCGGGCG
ATCCAGGTGGCCGTGGACGCCGCGACGCTCTCCCGCTTCGCCCTGAACACGACGGCGAACCCCCGGCCGGTGCTCTCCTT
CAACCTCACCGCCGGCCTGACCATCCGGAACCCGAGCAGGCGGACGGCCGTCTACTACGACGTGCTGTCGGCGGATGGTT
TCTACCGGGGGCTGCGCTTCGGCGCCGCCGCGCTGCCGCTGTCGTACCAGGGCGGGAGGCGCGCCGACGCGGTGCGCGCC
GTGCTCGTGGGGAGCTCGGGCGTGGTGTCCTGGGACGCCGGCGCGTTTGGTGAAGACAACCACACGGGGGTGTTCCCGGT
GACCCTGTGGGTTCTCGGCGCCGTGCGGTACAAGTACGGCGGGCTGATGACCACGTCGGCGACCATGCTGTCCGCGAGGT
GCCCGCTCGCGCTTAAGCTCGTGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis