Browse Element(s) Details


Os.5832.1.S1_at

Description gb:AU172991
DB_XREF= gi:12622778
DB_XREF=AU172991
CLONE=E60277
TID=Os.5832.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.5832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kinase (P0423B08.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6449011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein
LOC_Os01g64450Os.36345.1.S1_at10/111+37733111..37734090Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64460OsAffx.23915.1.S1_at10/111+37737511..37738223hypothetical protein
LOC_Os01g64470Os.12119.1.S1_at10/111+37738860..37739860Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28
LOC_Os01g64520Os.10279.1.S1_at11/111+37767524..37771518Uricase, putative, expressed
LOC_Os01g64520Os.52231.1.S1_at10/111+37767524..37771518Uricase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5832.1.S1_at--64--7051Chr01:37744429..37744453 (25 bp)
GTAAAATTTCTTACTGTCCCTGAAG
LOC_Os01g64490
Os.5832.1.S1_at--577--8731Chr01:37744334..37744358 (25 bp)
TGTCAAGTCTTTCAGGCAGCGAGCC
LOC_Os01g64490
Os.5832.1.S1_at--96--6211Chr01:37744309..37744333 (25 bp)
GAGGCCCTTGAAGGACTCCTGGAGC
LOC_Os01g64490
Os.5832.1.S1_at--1108--5911Chr01:37744288..37744312 (25 bp)
GAGCTTTCTGCGGATCTACTGCAAC
LOC_Os01g64490
Os.5832.1.S1_at--897--2671Chr01:37744149..37744173 (25 bp)
AAGCGAGTCGCAGTTCAATGTGAGT
LOC_Os01g64490
Os.5832.1.S1_at--671--10831Chr01:37744070..37744094 (25 bp)
TTGTGCTCTGCATCTCGAATTGTTG
LOC_Os01g64490
Os.5832.1.S1_at--295--5211Chr01:37744054..37744078 (25 bp)
GAATTGTTGCTTGATCACATCACCC
LOC_Os01g64490
Os.5832.1.S1_at--1135--371Chr01:37744041..37744065 (25 bp)
ATCACATCACCCTTATTTACATCGT
LOC_Os01g64490
Os.5832.1.S1_at--126--9891Chr01:37744024..37744048 (25 bp)
TACATCGTGTGATCCATTGGTCCCA
LOC_Os01g64490
Os.5832.1.S1_at--870--11Chr01:37744009..37744033 (25 bp)
ATTGGTCCCATGTTTGCGTCTTTAG
LOC_Os01g64490
Os.5832.1.S1_at--183--9151Chr01:37743995..37744019 (25 bp)
TGCGTCTTTAGTTTTCATTCTTTAC
LOC_Os01g64490
Target Sequence 
GTAAAATTTCTTACTGTCCCTGAAGTAAATTCTACTACTACTGCTATCAACAATGGATTCAAGGAGGAGGCAAGCCCAAC
GAAGGAAATTCTAGATGTCAAGTCTTTCAGGCAGCGAGCCGAGGCCCTTGAAGGACTCCTGGAGCTTTCTGCGGATCTAC
TGCAACACAATAGGCTGGAGGAGCTTGCGGTTGTTCTAAAGCCTTTCGGGAAGGATAAGGTATCTCCTCGAGAAACAGCA
ATCTGGTTGGCCAAAAGTTTTAAAGGGATGATGANTGATGAAGCGAGTCGCAGTTCAATGTGAGTACATATAATACCCAT
ATAAGGCCATAACATTAACCTTTTTCCGTTGTTTTTGGTTTGTGCTCTGCATCTCGAATTGTTGCTTGATCACATCACCC
TTATTTACATCGTGTGATCCATTGGTCCCATGTTTGCGTCTTTAGTTTTCATTCTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis